Ropebwt3-3.4 (r167)
Notable changes:
-
Improvement: in
sw
, removed out-of-band cells earlier. This speeds up
BWA-SW by 20%. -
Improvement:
sw
now computes positions in each thread. This improves the
multi-threading performance for short queries. -
Bugfix: with
mem
, ambiguous bases in query caused segmentation fault.
Ropebwt3 now converts ambiguous bases to "A". This does not affectsw
. -
Breaking: removed greedy MEM
(3.4: 20 August 2024, r167)