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Ropebwt3-3.4 (r167)

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@lh3 lh3 released this 20 Aug 13:05
· 94 commits to master since this release

Notable changes:

  • Improvement: in sw, removed out-of-band cells earlier. This speeds up
    BWA-SW by 20%.

  • Improvement: sw now computes positions in each thread. This improves the
    multi-threading performance for short queries.

  • Bugfix: with mem, ambiguous bases in query caused segmentation fault.
    Ropebwt3 now converts ambiguous bases to "A". This does not affect sw.

  • Breaking: removed greedy MEM

(3.4: 20 August 2024, r167)