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reformatted the table in README
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lh3 committed Aug 7, 2024
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19 changes: 8 additions & 11 deletions README.md
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Expand Up @@ -267,17 +267,14 @@ The following table shows the time to construct the BWT for three datasets:
BWTs are constructed from both strands, so the size of each BWT doubles the
number of input bases.

|Dataset | Metric |rb3 bulid|rb3 merge|grlBWT|pfp-thresholds|
|:--------------|:----------------|--------:|--------:|-----:|-------------:|
|human100 |Elapsed time (h) | 33.7| 24.2| 8.3| 51.7 |
| |CPU time (h) | 803.6| 757.2| 29.6| 51.5 |
| |Peak memory (GB) | 82.3| 70.7| 84.8| 788.1 |
|ecoli315k |Elapsed time (h) | 128.7|
| |CPU time (h) | 3826.8|
| |Peak memory (GB) | 20.5|
|CommonBacteria |Elapsed time (d) | 26.5|
| |CPU time (d) | 830.3|
| |Peak memory (GB) | 67.3|
|Dataset |Algorithm |Elapsed|CPU time|Peak RAM|
|:--------------|:---------|------:|-------:|-------:|
|human100 |rb3 build | 33.7h| 803.6h| 82.3GB|
| |rb3 merge | 24.2h| 757.2h| 70.7GB|
| |grlBWT | 8.3h| 29.6h| 84.8GB|
| |pfp-thres | 51.7h| 51.5h| 788.1GB|
|ecoli315k |rb3 build | 128.7h| 3826.8h| 20.5GB|
|CommonBacteria |rb3 build | 26.5d| 830.3d| 67.3GB|

For human100, the following methods were evaluated:

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