r146: changed default --outn to 1000

It doesn't hurt to have a large default value. Related to #13.
lh3 · Sep 27, 2022 · f076cbf · f076cbf
1 parent 4137611
commit f076cbf
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/miniprot.1 b/miniprot.1
@@ -127,7 +127,7 @@ Print unmapped query proteins
 Output up to
 .RI min{ NUM ,
 .BR -N }
-alignments per query [100].
+alignments per query [1000].
 .TP
 .BI -K \ NUM
 Query batch size [2M]

diff --git a/miniprot.h b/miniprot.h
@@ -3,7 +3,7 @@
 
 #include <stdint.h>
 
-#define MP_VERSION "0.3-r145-dirty"
+#define MP_VERSION "0.3-r146-dirty"
 
 #define MP_F_NO_SPLICE    0x1
 #define MP_F_NO_ALIGN     0x2

diff --git a/options.c b/options.c
@@ -39,7 +39,7 @@ void mp_mapopt_init(mp_mapopt_t *mo)
 	mo->mask_len = INT32_MAX;
 	mo->pri_ratio = 0.7f;
 	mo->best_n = 50;
-	mo->out_n = 100;
+	mo->out_n = 1000;
 	mo->kmer2 = 5;
 
 	mo->go = 11, mo->ge = 1;