Release miniprot-0.11 (r234)

lh3 · Apr 19, 2023 · 5c147e0 · 5c147e0
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diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,20 @@
+Release 0.11-r234 (18 April 2023)
+---------------------------------
+
+Notable changes:
+
+ * New feature: added option --trans to output translated protein sequences. It
+   is possible to extract these sequences from the --aln output but the --trans
+   output is smaller and more convenient.
+
+ * Bugfix: infinite error messages if a wrong option is in use.
+
+ * Improvement: better error messages given nonexisting query files (#40).
+
+(0.11: 18 April 2023, r234)
+
+
+
 Release 0.10-r225 (3 April 2023)
 --------------------------------
 
@@ -15,7 +32,7 @@ Release 0.9-r223 (9 March 2023)
 
 Notable change:
 
- * Bugfix: not query proteins were outputted with option `-u`.
+ * Bugfix: some query proteins were not outputted with option `-u`.
 
 (0.9: 9 March 2023, r223)
 

diff --git a/miniprot.1 b/miniprot.1
@@ -1,4 +1,4 @@
-.TH miniprot 1 "9 March 2023" "miniprot-0.9 (r223)" "Bioinformatics tools"
+.TH miniprot 1 "18 April 2023" "miniprot-0.11 (r234)" "Bioinformatics tools"
 .SH NAME
 .PP
 miniprot - protein-to-genome alignment with splicing and frameshifts
@@ -153,6 +153,9 @@ the query protein sequence. On a `##ATA' line, `!' denotes a frameshift
 insertion corresponding to the `F' CIGAR operator and `$' denotes a frameshift
 substitution corresponding to the `G' operator.
 .TP
+.B --trans
+Output translated protein sequences on `##STA' lines.
+.TP
 .BI --max-intron-out \ NUM
 In the
 .B --aln

diff --git a/miniprot.h b/miniprot.h
@@ -3,7 +3,7 @@
 
 #include <stdint.h>
 
-#define MP_VERSION "0.10-r233-dirty"
+#define MP_VERSION "0.11-r234"
 
 #define MP_F_NO_SPLICE    0x1
 #define MP_F_NO_ALIGN     0x2