Remove manylog and integrate a monitoring thread for worker logs #789

Workflow file for this run

	# GENERATED FILE, do not edit
	# This file was generated with Typeline
	# generated from: workflows/test.ts
	name: Automatic Tests
	'on':
	push:
	branches:
	- main
	paths:
	- lenskit/*.py
	- '**pyproject.toml'
	- pixi.*
	- requirements*.txt
	- data/**
	- .github/workflows/test.yml
	pull_request:
	paths:
	- lenskit/*.py
	- '**pyproject.toml'
	- pixi.*
	- requirements*.txt
	- data/**
	- .github/workflows/test.yml
	concurrency:
	group: 'test-${{github.ref}}'
	cancel-in-progress: true
	jobs:
	conda:
	name: 'Conda Python ${{matrix.python}} on ${{matrix.platform}}'
	runs-on: '${{matrix.platform}}'
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- py311
	- py312
	platform:
	- ubuntu-latest
	- macos-latest
	- windows-latest
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: 'test-${{matrix.python}}-core'
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit/lenskit lenskit/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-conda-${{matrix.platform}}-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	vanilla:
	name: 'Vanilla Python ${{matrix.python}} on ${{matrix.platform}}'
	runs-on: '${{matrix.platform}}'
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- '3.11'
	- '3.12'
	platform:
	- ubuntu-latest
	- macos-latest
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: "🐍 Set up Python"
	id: install-python
	uses: actions/setup-python@v5
	with:
	python-version: '${{matrix.python}}'
	- name: "🕶️ Set up uv"
	run: \|
	pip install -U 'uv>=0.1.15'
	- name: "📦 Set up Python dependencies"
	id: install-deps
	run: \|
	uv pip install --python $PYTHON "./lenskit[test]"
	shell: bash
	env:
	PYTHON: '${{steps.install-python.outputs.python-path}}'
	UV_EXTRA_INDEX_URL: 'https://download.pytorch.org/whl/cpu'
	UV_INDEX_STRATEGY: unsafe-first-match
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit/lenskit lenskit/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-vanilla-${{matrix.platform}}-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	nojit:
	name: Non-JIT test coverage
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: test-py311-funksvd
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 -m 'not slow' --cov=lenskit/lenskit --cov=lenskit-funksvd/lenskit lenskit/tests lenskit-funksvd/tests
	env:
	NUMBA_DISABLE_JIT: 1
	PYTORCH_JIT: 0
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-nojit
	path: \|
	test*.log
	coverage.db
	coverage.xml
	mindep:
	name: Minimal dependency tests
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: "🐍 Set up Python"
	id: install-python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: "🕶️ Set up uv"
	run: \|
	pip install -U 'uv>=0.1.15'
	- name: "📦 Set up Python dependencies"
	id: install-deps
	run: \|
	uv pip install --python $PYTHON "./lenskit[test]" --resolution=lowest-direct
	shell: bash
	env:
	PYTHON: '${{steps.install-python.outputs.python-path}}'
	UV_EXTRA_INDEX_URL: 'https://download.pytorch.org/whl/cpu'
	UV_INDEX_STRATEGY: unsafe-first-match
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit/lenskit lenskit/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-mindep
	path: \|
	test*.log
	coverage.db
	coverage.xml
	sklearn:
	name: 'Scikit-Learn tests on Python ${{matrix.python}}'
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- py311
	- py312
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: 'test-${{matrix.python}}-sklearn'
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-sklearn/lenskit lenskit-sklearn/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-sklearn-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	sklearn-mindep:
	name: Minimal dependency tests for Scikit-Learn
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: "🐍 Set up Python"
	id: install-python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: "🕶️ Set up uv"
	run: \|
	pip install -U 'uv>=0.1.15'
	- name: "📦 Set up Python dependencies"
	id: install-deps
	run: \|
	uv pip install --python $PYTHON "./lenskit[test]" "./lenskit-sklearn" --resolution=lowest-direct
	shell: bash
	env:
	PYTHON: '${{steps.install-python.outputs.python-path}}'
	UV_EXTRA_INDEX_URL: 'https://download.pytorch.org/whl/cpu'
	UV_INDEX_STRATEGY: unsafe-first-match
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-sklearn/lenskit lenskit-sklearn/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-mindep-sklearn
	path: \|
	test*.log
	coverage.db
	coverage.xml
	funksvd:
	name: 'FunkSVD tests on Python ${{matrix.python}}'
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- py311
	- py312
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: 'test-${{matrix.python}}-funksvd'
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-funksvd/lenskit lenskit-funksvd/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-funksvd-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	funksvd-mindep:
	name: Minimal dependency tests for FunkSVD
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: "🐍 Set up Python"
	id: install-python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: "🕶️ Set up uv"
	run: \|
	pip install -U 'uv>=0.1.15'
	- name: "📦 Set up Python dependencies"
	id: install-deps
	run: \|
	uv pip install --python $PYTHON "./lenskit[test]" "./lenskit-funksvd" --resolution=lowest-direct
	shell: bash
	env:
	PYTHON: '${{steps.install-python.outputs.python-path}}'
	UV_EXTRA_INDEX_URL: 'https://download.pytorch.org/whl/cpu'
	UV_INDEX_STRATEGY: unsafe-first-match
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-funksvd/lenskit lenskit-funksvd/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-mindep-funksvd
	path: \|
	test*.log
	coverage.db
	coverage.xml
	implicit:
	name: 'Implicit bridge tests on Python ${{matrix.python}}'
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- py311
	- py312
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: 'test-${{matrix.python}}-implicit'
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-implicit/lenskit lenskit-implicit/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-implicit-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	implicit-mindep:
	name: Minimal dependency tests for Implicit
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: "🐍 Set up Python"
	id: install-python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: "🕶️ Set up uv"
	run: \|
	pip install -U 'uv>=0.1.15'
	- name: "📦 Set up Python dependencies"
	id: install-deps
	run: \|
	uv pip install --python $PYTHON "./lenskit[test]" "./lenskit-implicit" --resolution=lowest-direct
	shell: bash
	env:
	PYTHON: '${{steps.install-python.outputs.python-path}}'
	UV_EXTRA_INDEX_URL: 'https://download.pytorch.org/whl/cpu'
	UV_INDEX_STRATEGY: unsafe-first-match
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-implicit/lenskit lenskit-implicit/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-mindep-implicit
	path: \|
	test*.log
	coverage.db
	coverage.xml
	hpf:
	name: 'HPF bridge tests on Python ${{matrix.python}}'
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python:
	- py311
	- py312
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: 'test-${{matrix.python}}-hpf'
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "🔍 Inspect environment"
	run: \|
	python -m lenskit.util.envcheck
	- name: "🏃🏻‍➡️ Test LKPY"
	run: \|
	python -m pytest --verbose --log-file=test.log --durations=25 --cov=lenskit-hpf/lenskit lenskit-hpf/tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: 'test-hpf-py${{matrix.python}}'
	path: \|
	test*.log
	coverage.db
	coverage.xml
	eval-tests:
	name: Evaluation-based tests
	runs-on: ubuntu-latest
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: test-py311-full
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: Cache ML data
	uses: actions/cache@v4
	with:
	path: \|
	data
	!data/*.zip
	key: test-mldata-001-ml-100k-ml-20m
	- name: Download ML data
	run: \|
	python -m lenskit.data.fetch ml-100k ml-20m
	- name: Run Eval Tests
	run: \|
	pytest --cov=lenskit/lenskit --cov=lenskit-funksvd/lenskit --cov=lenskit-implicit/lenskit --cov=lenskit-hpf/lenskit -m 'eval or realdata' --log-file test-eval.log */tests
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-eval-tests
	path: \|
	test*.log
	coverage.db
	coverage.xml
	doc-tests:
	name: 'Demos, examples, and docs'
	runs-on: ubuntu-latest
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: test-examples
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: Cache ML data
	uses: actions/cache@v4
	with:
	path: \|
	data
	!data/*.zip
	key: test-mldata-001-ml-100k-ml-1m-ml-10m-ml-20m
	- name: Download ML data
	run: \|
	python -m lenskit.data.fetch ml-100k ml-1m ml-10m ml-20m
	- name: "📕 Validate documentation examples"
	run: \|
	pytest --cov=lenskit/lenskit --cov=lenskit-funksvd/lenskit --cov=lenskit-implicit/lenskit --cov=lenskit-hpf/lenskit --nbval-lax --doctest-glob='.rst' --log-file test-docs.log docs /lenskit
	- name: "📐 Coverage results"
	if: '${{ !cancelled() }}'
	run: \|
	coverage xml
	coverage report
	cp .coverage coverage.db
	- name: "📤 Upload test results"
	uses: actions/upload-artifact@v4
	if: '${{ !cancelled() }}'
	with:
	name: test-examples
	path: \|
	test*.log
	coverage.db
	coverage.xml
	results:
	name: Test suite results
	runs-on: ubuntu-latest
	needs:
	- conda
	- vanilla
	- nojit
	- mindep
	- sklearn
	- sklearn-mindep
	- funksvd
	- funksvd-mindep
	- implicit
	- implicit-mindep
	- hpf
	- eval-tests
	- doc-tests
	if: '${{ !cancelled() }}'
	steps:
	- name: "🛒 Checkout"
	uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Add upstream remote & author config
	run: \|
	git remote add upstream https://github.com/lenskit/lkpy.git
	git fetch upstream
	git config user.name "LensKit Bot"
	git config user.email [email protected]
	- uses: prefix-dev/[email protected]
	with:
	pixi-version: latest
	activate-environment: true
	environments: report
	cache-write: false
	log-level: vv
	locked: false
	frozen: true
	- name: "📥 Download test artifacts"
	uses: actions/download-artifact@v4
	with:
	pattern: test-*
	path: test-logs
	- name: "📋 List log files"
	run: ls -laR test-logs
	- name: "🔧 Fix coverage databases"
	run: \|
	for dbf in test-logs/*/coverage.db; do
	echo "fixing $dbf"
	sqlite3 -echo "$dbf" "UPDATE file SET path = replace(path, '\', '/');"
	done
	- name: ⛙ Merge and report
	run: \|
	coverage combine --keep test-logs/*/coverage.db
	coverage xml
	coverage html -d lenskit-coverage
	coverage report --format=markdown >coverage.md
	- name: Analyze diff coverage
	if: github.event_name == 'pull_request'
	run: \|
	diff-cover --json-report diff-cover.json --markdown-report diff-cover.md \
	coverage.xml \|tee diff-cover.txt
	- name: "📤 Upload coverage to CodeCov"
	uses: codecov/[email protected]
	env:
	CODECOV_TOKEN: ab58c9cf-25b8-4283-a485-0b6382dc9a61
	- name: "🚫 Fail if coverage is too low"
	run: coverage report --fail-under=90

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Remove manylog and integrate a monitoring thread for worker logs #789

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Remove manylog and integrate a monitoring thread for worker logs #789

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