lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies

This repository contains the material used to participate in BioCreative VII Track 1 - Text mining drug and chemical-protein interactions (DrugProt), through the adaptation of the BiOnt system, using the Gene Ontology (GO) and Chemical Entities of Biological Interest (ChEBI) ontologies.

Our academic paper which describes our participation (lasigeBioTM) in the BioCreative VII will be available here.

Submitted Models

Our team submitted five runs, which correspond to the following models and features:

RUN	Ancestors	Class Weights	Post-processing Rules
1	x	x	x
2	-	-	-
3	-	x	-
4	-	-	x
5	-	x	x

Reference

Diana Sousa, Rodrigo Cassanheira, and Francisco M. Couto. 2021. lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies.