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Matching term not existent in gazeeter #32

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LLCampos opened this issue Mar 8, 2017 · 0 comments
Open

Matching term not existent in gazeeter #32

LLCampos opened this issue Mar 8, 2017 · 0 comments
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@LLCampos
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LLCampos commented Mar 8, 2017

When doing

bash get_entities.sh 1 T "sera Ser-," ChEBI

We get:

1	T	0	4	0.278652	sera	ChEBI	1
1	T	5	9	0.278652	Ser-	ChEBI	1

But sera does not exist on the ChEBI data files. So this does not return anything.

bash get_entities.sh 1 T "sera" ChEBI

And curiously, this happens:

bash get_entities.sh 1 T "sera Ser-" ChEBI
1	T	5	8	0.0897608	Ser	ChEBI	1

So is something related to the comma.

The first command shown in this issue should return:

1	T	5	9	0.278652	Ser-	ChEBI	1

Because ser- is a ChEBI term.

@LLCampos LLCampos added the bug label Mar 8, 2017
LLCampos pushed a commit that referenced this issue Mar 8, 2017
LLCampos pushed a commit that referenced this issue Mar 8, 2017
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