update branson and parthenon submodules, and mlmd

lanl · Mar 14, 2024 · d203e5c · d203e5c
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diff --git a/branson b/branson
diff --git a/doc/sphinx/05_mlmd/mlmd.rst b/doc/sphinx/05_mlmd/mlmd.rst
@@ -261,8 +261,8 @@ Training HIPNN Model
 --------------------
 For the training task, only a single FOM needs to be reported, the average epoch time found in the ``model_results.txt`` file. 
 
-* On Chicoma using a single GPU - FOM Average Epoch time:  0.24648178 
-* On Crossroads using a single node - FOM Average Epoch time:   2.63468153
+* On Chicoma using a single GPU - 1 / FOM Average Epoch time:  1/0.24648178 = 4.05709
+* On Crossroads using a single node - 1 / FOM Average Epoch time:   1/2.63468153 = .37956426022925681317
 
 Simulation+Inference 
 --------------------

diff --git a/parthenon b/parthenon
+0 −2		inputs/big_cube.xml
+0 −3		inputs/cube_decomp_test.xml
+0 −2		inputs/hot_zone_input.xml
+2 −2		src/CMakeLists.txt
+2 −2		src/decompose_mesh.h
+17 −20		src/imc_parameters.h
+47 −59		src/input.h
+1 −1		src/main.cc
+3 −5		src/mesh.h
+3 −2		src/particle_pass_driver.h
+2 −2		src/replicated_driver.h
+1 −0		src/test/CMakeLists.txt
+85 −0		src/test/test_imc_parameters.cc
+0 −4		src/test/test_input.cc
+0 −4		CHANGELOG.md
+0 −3		CMakeLists.txt
+6 −9		doc/sphinx/src/README.rst
+6 −13		doc/sphinx/src/interface/state.rst
+0 −1		doc/sphinx/src/outputs.rst
+4 −9		doc/sphinx/src/parthenon_manager.rst
+90 −120		doc/sphinx/src/tasks.rst
+135 −101		example/poisson/poisson_driver.cpp
+4 −4		example/poisson_gmg/parthinput.poisson
+5 −3		example/poisson_gmg/poisson_driver.cpp
+5 −3		src/CMakeLists.txt
+1 −4		src/application_input.hpp
+6 −7		src/basic_types.hpp
+13 −11		src/bvals/comms/boundary_communication.cpp
+4 −4		src/bvals/comms/bvals_in_one.hpp
+11 −4		src/coordinates/uniform_cartesian.hpp
+1 −1		src/defs.hpp
+1 −1		src/driver/driver.hpp
+1 −1		src/driver/multistage.hpp
+14 −27		src/interface/sparse_pack.hpp
+1 −2		src/mesh/domain.hpp
+1 −41		src/mesh/mesh.cpp
+1 −18		src/mesh/mesh.hpp
+1 −7		src/mesh/meshblock.cpp
+1 −3		src/mesh/meshblock.hpp
+1 −66		src/outputs/output_utils.cpp
+1 −57		src/outputs/output_utils.hpp
+1 −2		src/outputs/outputs.cpp
+9 −14		src/outputs/outputs.hpp
+522 −466		src/outputs/parthenon_hdf5.cpp
+3 −2		src/parthenon/driver.hpp
+14 −6		src/parthenon_manager.cpp
+2 −9		src/pgen/default_pgen.cpp
+64 −51		src/solvers/bicgstab_solver.hpp
+42 −30		src/solvers/mg_solver.hpp
+23 −15		src/solvers/solver_utils.hpp
+157 −0		src/tasks/task_id.cpp
+51 −0		src/tasks/task_id.hpp
+538 −0		src/tasks/task_list.hpp
+102 −0		src/tasks/task_types.hpp
+0 −500		src/tasks/tasks.hpp
+0 −139		src/tasks/thread_pool.hpp
+4 −4		tst/style/cpplint.py
+4 −8		tst/unit/test_sparse_pack.cpp
+25 −11		tst/unit/test_taskid.cpp
+1 −1		tst/unit/test_tasklist.cpp