Update URLs to point to re-git.

[KineticTheory]

Background

I found a few more URLs in source code that were pointing to redmine. I have updated these to point to re-git or I have removed the reference.

Description of changes

• Touching ApplicationUnitTest.cmake forced me to implement the cmake-format fixes.

Status

• Reference:
  • Pre-Merge Code Review
  • CDash Status
• Checks
  • Travis/Appveyor CI checks pass
  • Code coverage does not decrease
  • Valgrind test passes
  • Toss3 checks pass
  • Trinitite checks pass
  • Code reviewed/approved, sufficient DbC checks, testing, documentation

[codecov]

Codecov Report

Merging #1102 (e08c1be) into develop (a659254) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##           develop   #1102   +/-   ##
=======================================
  Coverage     88.7%   88.7%           
=======================================
  Files          374     374           
  Lines        18593   18593           
=======================================
  Hits         16497   16497           
  Misses        2096    2096           

[KineticTheory]

@attom Can you merge this? All tests passed.