MyoQuant v0.3.5

fixing tensorflow torch import bug

MyoQuant v0.3.3

• New ATP option such as erosien and new intensity methods
• Fixing a few bugs
• Version option

MyoQuant v0.2.2

Rework with ATP add and demo integration

MyoQuant v0.2.2

Fix SDH URL Lib

Myoquant v0.2.1

• Clearer CLI stdout and progress

v0.2.0

New options for the analysis:
--mask-path FILE: The path to a binary mask to hide slide region during analysis. It needs to be of the same resolution as input image and only pixel marked as 1 will be analyzed. (Basically a simple .tif image with 0/1, with 0 being pixels ignored during the analysis and 1 pixels kept for the analysis)
--export-map / --no-export-map: Export the original image with cells painted by classification label. [default: export-map]. (A file [IMAGE_NAME]_label_blend.tiff is generated at the end of the analysis where the original image is blended with the green/red label map for visualisation of all fibers classification)
--export-stats / --no-export-stats: Export per fiber and per nuclei stat table. [default: export-stats]. ( A file [IMAGE_NAME]_cell_details.csv is generated that contains informations about all cell detected (area, coordinates...) and the number of nuclei (intern+periph) as columns. + A file [IMAGE_NAME]_nuc_details.csv is generated that contains informations about all analyzed nuclei (with the correspond fiber ID and the nuclei eccentricity score and class)
--fluo-nuc FILE: The path to single channel fluo image for nuclei. (An option to indicate the single channel image for the DAPI, so we can blend tritC and DAPI together and it also indicated that the analysis is done on single channel images)

Myoquant v0.1.7

Fix HE-analysis threshold param not taken into consideration

Myoquant v0.1.6

• Fixing a bug in he-analysis: the program was crashing when a nucleus was located at the exact coordinate of the fiber center (division by 0 error)

Myoquant v0.1.3

First working release of MyoQuant command line tool featuring working SDH and HE analysis.