CardinalIO 1.4.0

CHANGES IN VERSION 1.3.6 [2024-10-24]

BUG FIXES

o Fix writing scientific notation to imzML output
    (note: only affected parsing, not precision)

CHANGES IN VERSION 1.3.5 [2024-10-16]

NEW FEATURES

o Support for parallel writing with BiocParallel
o Added 'BPPARAM' argument to 'writeAnalyze()'
o Added 'BPPARAM' argument to 'writeImzML()'

SIGNIFICANT USER-VISIBLE CHANGES

o Return 'outdata' attribute on 'writeAnalyze()'
    results with output 'matter' object
o Return 'outdata' attribute on 'writeImzML()'
    results with output 'matter' object

CHANGES IN VERSION 1.3.4 [2024-9-7]

SIGNIFICANT USER-VISIBLE CHANGES

o Parse imzML "binary data compression type" tags
o Compressed ibd data arrays are now attached as
    raw byte arrays (_without_ decompression)

CHANGES IN VERSION 1.3.3 [2024-8-13]

SIGNIFICANT USER-VISIBLE CHANGES

o Changed default 'mz.type' from "float32" to "float64"

CHANGES IN VERSION 1.3.2 [2024-7-31]

SIGNIFICANT USER-VISIBLE CHANGES

o Renaming imzML files when 'asis=TRUE' now signals a warning

CHANGES IN VERSION 1.3.1 [2024-6-20]

BUG FIXES

o Update broken unit test to reflect recent changes in 'matter'

CardinalIO 1.2.2

NOTE: Not available on Bioconductor (released after freezing 3.19)

CHANGES IN VERSION 1.2.2 [2024-10-24]

BUG FIXES

o Fix writing scientific notation to imzML output
    (note: only affected parsing, not precision)

CardinalIO 1.2.1

CHANGES IN VERSION 1.2.1 [2024-5-7]

SIGNIFICANT USER-VISIBLE CHANGES

o Allow multiple options to 'check' in 'parseImzML'

BUG FIXES

o Check ibd file size against imzML binary data array offsets

CHANGES IN VERSION 1.1.6 [2024-4-24]

BUG FIXES

o Non-existent 'extraArrays' produce NULL instead of error

CHANGES IN VERSION 1.1.5 [2024-4-8]

BUG FIXES

o Allow root tags in 'ImzMeta' (e.g., if a tag is unknown)

CHANGES IN VERSION 1.1.4 [2024-4-7]

SIGNIFICANT USER-VISIBLE CHANGES

o Updated README.md

CHANGES IN VERSION 1.1.3 [2024-3-18]

NEW FEATURES

o Made 'writeAnalyze()' an S4 generic
o Add optional 'positions' parameter to 'writeAnalyze()'

SIGNIFICANT USER-VISIBLE CHANGES

o Change 'writeAnalyze()' parameter 'mz' to 'domain'

CHANGES IN VERSION 1.1.2 [2024-3-13]

BUG FIXES

o Remove case sensitivity when checking file extensions

CHANGES IN VERSION 1.1.1 [2024-2-18]

BUG FIXES

o Fix error when setting 'ImzMeta' elements to NULL