added supported for user-provided KOTLIN_OPTS (fixes #8)

.gitignore

@@ -1,5 +1,6 @@
 .gradle
 build/
+target/
 
 # Ignore Gradle GUI config
 gradle-app.setting

NEWS.md

@@ -3,9 +3,10 @@
 ## v1.1
 
 * Support for stdin and process substitution as script source. See [examples](examples/unit_tests.sh)
-* TBD: versioning and auto-update
-* TBD: basic command-line help
+* versioning and auto-update
+* basic command-line help
+* Added support for `KOTLIN_OPTS` (see [#8](https://github.com/holgerbrandl/kscript/issues/8))
 
 
-##
+## v1.0
 Initial Release

README.md

@@ -110,6 +110,20 @@ The initial version of `kscript` was kindly contributed by Oscar Gonzalez.
 
 `kscript` works better with [Intellij](https://www.jetbrains.com/idea/), since extended multi-line shebang-headers are not (yet?) supported by Intellij's' Kotlin plugin (even if the kotlin-script parser seems to be able to handle them).  However,  for dependency resolution, `kotlin script` relies on such mutli-line shebang headers (see [here](https://github.com/andrewoma/kotlin-script#mvncp)). In contrast, since `kscript` just works with just a standard shebang line, code parsing works very well in Intellij.
 
+FAQ
+============
+
+### How to adjust the memory the JVM running my scriptlets?
+
+`kscript` allows to provide a `//KOTLIN_OPTS` line followed by parameters passed on to `kotlin` similar to how dependencies are defined:
+```kotlin
+#!/usr/bin/env kscript
+//KOTLIN_OPTS -J-Xmx5g  -J-server
+
+println("Hello from Kotlin with 5g of heap memory in server mode!")
+```
+
+
 Issues
 =======
 

examples/more_examples.sh

@@ -46,11 +46,6 @@ https://www.biostars.org/p/52698/
 
 
 
-fun main(args: Array<String>) {
-    kutils.KscriptHelpers.processStdin { "huhu" + it }
-}
-
-
 kscript -s '
 //DEPS de.mpicbg.scicomp:kutils:0.2-SNAPSHOT
 kutils.KscriptHelpers.processStdin { "huhu" + it }
@@ -62,11 +57,10 @@ kscript -st '"huhu" + it'
 
 
 ## REPL test: Filter-Join fasta files by ID
-kotlinc -classpath $(expandcp.kts de.mpicbg.scicomp:kutils:0.2-SNAPSHOT) 
+kotlinc -classpath $(expandcp.kts de.mpicbg.scicomp:kutils:0.2)
 <<"EOF"
+import de.mpicbg.scicomp.kscript.*
 
-
-kutils.KscriptHelpers.processStdin { "huhu" + it }
-kscript 
+"house\nasdf".processLines { "huhu" + it }
 
 EOF

examples/scratchpad.kts

@@ -1,24 +1 @@
 #!/usr/bin/env kscript
-
-import de.mpicbg.scicomp.kscript.processLines
-
-println("ok")
-println(args.joinToString())
-
-// test
-
-
-//generateSequence() { readLine() }.map {
-//File(args[0]).readLines().map {}
-
-java.io.File(args[0]).useLines {
-    it.map {
-        if (!it.startsWith(">")) {
-            it.substring(0, 20)
-        } else it
-    }.forEach { println(it) }
-}
-
-
-java.io.File(args[0]).processLines { it + "foo" }
-

examples/unit_tests.sh

@@ -47,3 +47,31 @@ println((1+3).toString() + " test")
 
 kscript <(cat .test.kts)
 
+
+
+## (4) KOTLIN_OPTS (
+
+kscript - <<"EOF" | grep "^-ea"
+//KOTLIN_OPTS -J-Xmx5g  -J-server -J-ea
+
+import java.lang.management.ManagementFactory
+import java.lang.management.RuntimeMXBean
+
+println("Hello from Kotlin with 5g of heap memory in server mode!")
+
+val bean = ManagementFactory.getRuntimeMXBean()
+val aList = bean.inputArguments
+
+for (i in aList.indices) {
+    println(aList[i])
+}
+
+EOF
+
+
+
+
+
+public void runtimeParameters() {
+
+}

expandcp.kts

@@ -80,6 +80,13 @@ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xs
     <artifactId>resdep_template</artifactId>
     <version>1.0-SNAPSHOT</version>
 
+     <repositories>
+        <repository>
+            <id>jcenter</id>
+            <url>http://jcenter.bintray.com/</url>
+        </repository>
+    </repositories>
+
     <dependencies>
     ${depTags.joinToString("\n")}
     </dependencies>

kscript

@@ -65,6 +65,8 @@ if ! which expandcp.kts &> /dev/null; then
 fi
 
 dependencies=$(grep -F "//DEPS" ${scriptFile} | head -n1 | cut -f2- -d' ' | tr ',;' ' ')
+kotlin_opts=$(grep -F "//KOTLIN_OPTS" ${scriptFile} | head -n1 | cut -f2- -d' ')
+
 #dependencies=" org.docopt:docopt:0.6.0-SNAPSHOT log4j:log4j:1.2.14 "
 
 if [ -n "$dependencies" ]; then
@@ -132,4 +134,5 @@ fi
 #jar ufm ${jarFile} ${mainJava}.manimain
 #jar tf ${jarFile}
 
-exec kotlin -classpath ${jarFile}:"$classpath" Main_${className} "$@"
+echo KOTLIN_OPTS are ${kotlin_opts}
+exec kotlin ${kotlin_opts} -classpath ${jarFile}:"$classpath" Main_${className} "$@"