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  1. plant-seg plant-seg Public

    A tool for cell instance aware segmentation in densely packed 3D volumetric images

    Python 100 31

  2. spoco spoco Public

    PyTorch implementation of SPOCO

    Python 32 7

  3. go-nuclear go-nuclear Public

    Guides and code for 3D nuclear instance segmentation

    Python 20 3

  4. MorphoFeatures MorphoFeatures Public

    MorphoFeatures code and data

    Python 18 3

  5. hylfm-net hylfm-net Public

    Python 14 2

  6. teaching-dl-course-2019 teaching-dl-course-2019 Public

    EMBL Deep Learning course 2019 exercises and materials

    Jupyter Notebook 6 9

Repositories

Showing 10 of 37 repositories
  • bioimg_rs Public

    A rust implementation of bioimage spec parser

    kreshuklab/bioimg_rs’s past year of commit activity
    Rust 1 1 0 0 Updated Dec 6, 2024
  • plant-seg Public

    A tool for cell instance aware segmentation in densely packed 3D volumetric images

    kreshuklab/plant-seg’s past year of commit activity
    Python 100 MIT 31 35 1 Updated Dec 5, 2024
  • go-nuclear Public

    Guides and code for 3D nuclear instance segmentation

    kreshuklab/go-nuclear’s past year of commit activity
    Python 20 MIT 3 0 0 Updated Dec 4, 2024
  • predoc-course Public

    Kreshuk Lab's EMBL EIPP predoc course teaching material, each branch keeps the record of a specific season

    kreshuklab/predoc-course’s past year of commit activity
    Jupyter Notebook 2 2 0 0 Updated Nov 4, 2024
  • teaching-dl-course-2019 Public

    EMBL Deep Learning course 2019 exercises and materials

    kreshuklab/teaching-dl-course-2019’s past year of commit activity
    Jupyter Notebook 6 MIT 9 1 0 Updated Aug 13, 2024
  • spoco Public

    PyTorch implementation of SPOCO

    kreshuklab/spoco’s past year of commit activity
    Python 32 7 1 1 Updated Aug 3, 2024
  • mouse-embryo-seg Public

    3D segmentation of nuclei (fixed) and cells (live) of the developing mouse embryo

    kreshuklab/mouse-embryo-seg’s past year of commit activity
    Python 4 1 0 0 Updated Jul 23, 2024
  • covid-if-2 Public
    kreshuklab/covid-if-2’s past year of commit activity
    Python 0 0 0 0 Updated Jul 14, 2024
  • 3D-GT-tools Public

    List of tools for creating ground truth annotations for 3D data

    kreshuklab/3D-GT-tools’s past year of commit activity
    1 0 0 0 Updated Mar 26, 2024
  • EMBL-Deep-Learning-course-2023- Public

    EMBL Deep Learning course 2023 exercises and materials

    kreshuklab/EMBL-Deep-Learning-course-2023-’s past year of commit activity
    Jupyter Notebook 5 5 1 3 Updated Feb 28, 2024
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