Correct issue with anvio binning file.

koszullab · Apr 12, 2023 · 732b9e5 · 732b9e5
1 parent db50d68
commit 732b9e5
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/metator/validation.py b/metator/validation.py
@@ -866,6 +866,9 @@ def recursive_decontamination(
     # Return some values of efficiency of the binning.
     give_results_info(bin_summary)
 
+    # Correct final bin value in contigs data
+    contigs_data = correct_final_bin(contigs_data, final_fasta_dir, bin_summary)
+
     # Write relevant bins/contigs information for anvio.
     binning_file = join(outdir, "binning.txt")
     contigs_data = write_bins_contigs(
@@ -879,9 +882,6 @@ def recursive_decontamination(
     bin_summary_file = join(outdir, "bin_summary.txt")
     mio.write_bin_summary(bin_summary, bin_summary_file)
 
-    # Correct final bin value in contigs data
-    contigs_data = correct_final_bin(contigs_data, final_fasta_dir, bin_summary)
-
     # Write the new file
     contig_data_file_final = join(outdir, "contig_data_final.txt")
     contigs_data.to_csv(