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Small fix stats.py #83

Merged
merged 1 commit into from
May 16, 2024
Merged

Small fix stats.py #83

merged 1 commit into from
May 16, 2024

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nmendiboure
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@nmendiboure nmendiboure commented May 16, 2024

Hi,

Here a very small fix to allow other Q filters (other than 30, default min_qual in full_pipeline) in the stats.py.

In the case Q != 30, re.sub wasn't able to find the corresponding substring in the log, leading to a conversion error from string to int in the following line.

kind regards,

Nicolas

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@cmdoret cmdoret left a comment

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Looks good to me, nice catch :)

@cmdoret cmdoret linked an issue May 16, 2024 that may be closed by this pull request
@cmdoret cmdoret merged commit 9f04d34 into koszullab:master May 16, 2024
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Error : Fetching mapping and pairing stats
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