fixed incorrect dir path in buildignore. Exported 2 functions.

.Rbuildignore

@@ -1,4 +1,4 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
-.\temp
-.\test
+^\./test$
+^\./temp$

NAMESPACE

@@ -1,2 +1,4 @@
 # Generated by roxygen2: do not edit by hand
 
+export(fitCReml)
+export(recl)

R/fitCReml.R

@@ -7,10 +7,11 @@
 #' @param init named vector of initial value for optimiation of \code{recl}. Must (at least) contain named elements \emph{sigma2} and \emph{phi}. Can also contain \emph{nugget} and \emph{kappa}.
 #' @param poinstj A list of row numbers that indicates which row belongs to block j (block j is itself a union of block k and block l). See Details.
 #' @param pointsjpair A list of pair integers from \code{1} to \code{length(pointsj)}. Each pair indicates which pairs of \code{pointjs} components should be bundled together in the variance calculation. See Details.
-#' @param pointsk
+#' @param pointsk not used.
 #' @param cov.model character string that specifies the spatial covariance model. See \code{?geoR::cov.spatial}
 #' @param lower Numeric vector of lower bound for the estimating parameters. Default to NULL (no lower bound).
 #'
+#' @export
 
 
 fitCReml=function(form,data,dS,coordsMat,init,pointsj,pointsjpair,pointsk,cov.model=cov.model,lower=NULL){

R/recl.R

@@ -8,6 +8,8 @@
 #' @param Xmat the design matrix (not the data.frame)
 #' @param pointsj A list. Each list contains the row number of the data matrix (Y or Xmat or coordsMat) that correspond to the (k,l) block.
 #' @param cov.model This is passed to \code{geoR::cov.spatial}
+#'
+#' @export
 
 recl=function(theta,coordsMat,Y,Xmat,pointsj,cov.model="exp",...){
   if(length(unique(c(nrow(coordsMat),length(Y),nrow(Xmat))))>1)stop("coordsMat, Y, and X must be of the same length (or have the same number of rows).")