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SYnthesized Molecular and Ecological Neutral Theory: A genome based synthesis using simulation models

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SYMENT

SYnthesized Molecular and Ecological Neutral Theory: A genome based synthesis using simulation models

Python-based code for a simulation model that induces genetic and ecological random drift in individuals represented by genomes. Output must be analyzed with genomic alignment software (e.g. MOTHUR) which is capable of producing abundance distributions in rank form and of producing output that can be analyzed as a lattic of individuals belonging to different taxa.

License

SYMENT is licensed under the open source MIT License

Copyright (c) 2013 Ken Locey

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Contact information

Ken Locey's email: [email protected] and [email protected]

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