Using Metaboverse

To use the Metaboverse app, please click here

What does Metaboverse do?

A current draft of the manuscript describing Metaboverse can be found here

Requirements

• Python 3.6 or greater
• An internet connection for network curation
• The Metaboverse app

Other Notes

• This product includes color specifications and designs developed by Cynthia Brewer (http://colorbrewer.org/).

Build metaboverse-cli for the first time

conda create -n pyinstaller
conda activate pyinstaller

conda install python=3.8
pip install pyinstaller 
pip install pandas numpy scipy scikit-learn networkx requests

pyinstaller metaboverse-cli.spec

Re-use metaboverse-cli build environment

conda activate pyinstaller

conda install python=3.8
pip install pyinstaller --upgrade
pip install pandas numpy scipy scikit-learn networkx requests --upgrade

pyinstaller metaboverse-cli.spec

Utilizing a custom Metaboverse network

Custom networks are archived at https://github.com/Metaboverse/Custom-Networks/curated_organisms. Once a network is curated, input it into the Metaboverse GUI .....

Example for building organism network

metaboverse-cli-windows.exe curate --output . --organism_id M_leprae --database_source custom --force_new_curation --organism_curation_file E:\projects\Custom-Networks\curated_organisms\m_leprae\m_leprae.json