Lots of improvements over 1.0:
- Better user experience (UX) - much easier to understand what's going on while the pipeline is running, more output to console, better filenames, and cleaner logs for warnings/failures.
- Safer code - lots of checks implemented to make sure nothing unexpected gets into your results, and to let the user know if it does.
- More able to handle large datasets - mostly a UX thing as progress bars etc. have been implemented.
- Basecall optimisation - I've done extended testing against large amounts of Sanger traces coming off the ABI 3730 and optimised the basecalling parameters in pipe.one accordingly. This has resulted in a big boost to cluster and classification success rate.
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Full Changelog: v1.0.0...v1.1.0