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| apptainer run \ | ||
| --bind $PWD:/data \ | ||
| docker://openjournals/inara \ | ||
| -o pdf,crossref \ | ||
| /data/paper.md |
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| <?xml version="1.0" encoding="UTF-8"?> | ||
| <doi_batch xmlns="http://www.crossref.org/schema/5.3.1" | ||
| xmlns:ai="http://www.crossref.org/AccessIndicators.xsd" | ||
| xmlns:rel="http://www.crossref.org/relations.xsd" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| version="5.3.1" | ||
| xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd"> | ||
| <head> | ||
| <doi_batch_id>20240708145644-7e11502d182ce55e2e639cd745449e49b6b97124</doi_batch_id> | ||
| <timestamp>20240708145644</timestamp> | ||
| <depositor> | ||
| <depositor_name>JOSS Admin</depositor_name> | ||
| <email_address>[email protected]</email_address> | ||
| </depositor> | ||
| <registrant>The Open Journal</registrant> | ||
| </head> | ||
| <body> | ||
| <journal> | ||
| <journal_metadata> | ||
| <full_title>Journal of Open Source Software</full_title> | ||
| <abbrev_title>JOSS</abbrev_title> | ||
| <issn media_type="electronic">2475-9066</issn> | ||
| <doi_data> | ||
| <doi>10.21105/joss</doi> | ||
| <resource>https://joss.theoj.org</resource> | ||
| </doi_data> | ||
| </journal_metadata> | ||
| <journal_issue> | ||
| <publication_date media_type="online"> | ||
| <month>01</month> | ||
| <year>1970</year> | ||
| </publication_date> | ||
| <journal_volume> | ||
| <volume>¿VOL?</volume> | ||
| </journal_volume> | ||
| <issue>¿ISSUE?</issue> | ||
| </journal_issue> | ||
| <journal_article publication_type="full_text"> | ||
| <titles> | ||
| <title>TVTB: The VCF Tool Box</title> | ||
| </titles> | ||
| <contributors> | ||
| <person_name sequence="first" contributor_role="author"> | ||
| <given_name>Kevin</given_name> | ||
| <surname>Rue-Albrecht</surname> | ||
| <ORCID>https://orcid.org/0000-0003-3899-3872</ORCID> | ||
| </person_name> | ||
| </contributors> | ||
| <publication_date> | ||
| <month>01</month> | ||
| <day>01</day> | ||
| <year>1970</year> | ||
| </publication_date> | ||
| <pages> | ||
| <first_page>¿PAGE?</first_page> | ||
| </pages> | ||
| <publisher_item> | ||
| <identifier id_type="doi">N/A</identifier> | ||
| </publisher_item> | ||
| <ai:program name="AccessIndicators"> | ||
| <ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| <ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| <ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| </ai:program> | ||
| <rel:program> | ||
| <rel:related_item> | ||
| <rel:description>Software archive</rel:description> | ||
| <rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281</rel:inter_work_relation> | ||
| </rel:related_item> | ||
| <rel:related_item> | ||
| <rel:description>GitHub review issue</rel:description> | ||
| <rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals</rel:inter_work_relation> | ||
| </rel:related_item> | ||
| </rel:program> | ||
| <doi_data> | ||
| <doi>N/A</doi> | ||
| <resource>https://joss.theoj.org/papers/N/A</resource> | ||
| <collection property="text-mining"> | ||
| <item> | ||
| <resource mime_type="application/pdf">https://joss.theoj.org/papers/N/A.pdf</resource> | ||
| </item> | ||
| </collection> | ||
| </doi_data> | ||
| <citation_list> | ||
| <citation key="McLaren:2016"> | ||
| <article_title>The ensembl variant effect | ||
| predictor</article_title> | ||
| <author>McLaren</author> | ||
| <journal_title>Genome Biol</journal_title> | ||
| <issue>1</issue> | ||
| <volume>17</volume> | ||
| <doi>10.1186/s13059-016-0974-4</doi> | ||
| <issn>1474-760X</issn> | ||
| <cYear>2016</cYear> | ||
| <unstructured_citation>McLaren, W., Gil, L., Hunt, S. E., | ||
| Riat, H. S., Ritchie, G. R., Thormann, A., Flicek, P., & Cunningham, | ||
| F. (2016). The ensembl variant effect predictor [Journal Article]. | ||
| Genome Biol, 17(1), 122. | ||
| https://doi.org/10.1186/s13059-016-0974-4</unstructured_citation> | ||
| </citation> | ||
| <citation key="Obenchain:2014"> | ||
| <article_title>VariantAnnotation: A bioconductor package for | ||
| exploration and annotation of genetic variants</article_title> | ||
| <author>Obenchain</author> | ||
| <journal_title>Bioinformatics</journal_title> | ||
| <issue>14</issue> | ||
| <volume>30</volume> | ||
| <doi>10.1093/bioinformatics/btu168</doi> | ||
| <issn>1367-4811</issn> | ||
| <cYear>2014</cYear> | ||
| <unstructured_citation>Obenchain, V., Lawrence, M., Carey, | ||
| V., Gogarten, S., Shannon, P., & Morgan, M. (2014). | ||
| VariantAnnotation: A bioconductor package for exploration and annotation | ||
| of genetic variants [Journal Article]. Bioinformatics, 30(14), | ||
| 2076–2078. | ||
| https://doi.org/10.1093/bioinformatics/btu168</unstructured_citation> | ||
| </citation> | ||
| <citation key="S4Vectors:2024"> | ||
| <volume_title>S4Vectors: Foundation of vector-like and | ||
| list-like containers in bioconductor</volume_title> | ||
| <author>Pagès</author> | ||
| <cYear>2024</cYear> | ||
| <unstructured_citation>Pagès, H., Lawrence, M., & | ||
| Aboyoun, P. (2024). S4Vectors: Foundation of vector-like and list-like | ||
| containers in bioconductor. | ||
| https://bioconductor.org/packages/S4Vectors</unstructured_citation> | ||
| </citation> | ||
| </citation_list> | ||
| </journal_article> | ||
| </journal> | ||
| </body> | ||
| </doi_batch> |
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