PEP 639 compliance with license-file #31
Workflow file for this run
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| name: Tests and lint | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - "*" | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| lint-flags: | |
| - "--run-only-fast-linters" | |
| - "--run-only-pylint" | |
| - "--run-only-mypy" | |
| - "--run-only-bandit" | |
| - "--run-only-cargo-clippy" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Run lint checks | |
| run: | | |
| ./scripts/lint.sh ${{ matrix.lint-flags }} | |
| unit_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Install codecov dependencies | |
| run: | | |
| curl -Os https://uploader.codecov.io/latest/linux/codecov | |
| chmod +x codecov | |
| - name: Run unit tests with pytest | |
| run: | | |
| pytest --cov=src/sequence_align tests/unit | |
| ./codecov -t ${CODECOV_TOKEN} | |
| perf_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Run performance tests with pytest | |
| run: | | |
| pytest tests/perf |