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DESCRIPTION
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Package: Dozer
Title: Debiased Personalized Co-Expression Network Analysis
Version: 0.0.0.9000
Authors@R:
person("Shan",, "Lu", "[email protected]", role = c("aut", "cre"))
Description: The package constructs debiased co-expression networks from single cell RNA-Sequencing datasets. With donor id, donor metadata, cell type or cell stage labels provided, the package can generate cell type and/or donor specific networks, extract gene centrality, gene modules, module densities and associate network properties with donor specifc information.
License: `use_mit_license()`
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Imports:
igraph,
foreach,
doParallel,
parallel,
matrixStats,
Matrix,
dynamicTreeCut
Suggests:
knitr,
rmarkdown,
lcmix
VignetteBuilder: knitr
Depends: R (>= 4.0)
biocViews:
GeneExpression,
Software,
Co-expression,
Population scale scRNA-seq,
Poisson measurement model