GHA: use bash login shells

kdm9 · Jan 16, 2024 · 79b5fa1 · 79b5fa1
1 parent 3a01274
commit 79b5fa1
Showing 1 changed file with 2 additions and 4 deletions.
diff --git a/.github/workflows/run-snakemake.yml b/.github/workflows/run-snakemake.yml
@@ -33,18 +33,16 @@ jobs:
       - name: setup data
         shell: bash -el {0}
         run: |
-          export BASH_ENV=~/.bashrc
           mamba info
           pushd tests
-          bash setup.sh
+          bash -el setup.sh
           popd
 
       - name: run workflow
         shell: bash -el {0}
         run: |
-          export BASH_ENV=~/.bashrc
           pushd tests
-          bash test.sh
+          bash -el test.sh
           popd
 
       - name: cat all log files on failure