Use single-precision floats for UMAP, for speed. (#92) #535
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: Test JS bindings | |
| env: | |
| IMAGE_VERSION: master | |
| jobs: | |
| prepare-version: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "null" | |
| outputs: | |
| version: ${{ env.IMAGE_VERSION }} | |
| # Building the RDS files for the various RDS-reading utilities. | |
| create_rds: | |
| runs-on: ubuntu-latest | |
| container: rocker/r-base:latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Cache RDS files | |
| id: cache-rds | |
| uses: actions/cache@v4 | |
| with: | |
| path: tests/rds/*.rds | |
| key: rds-${{ hashFiles('tests/rds/generate.R') }} | |
| - name: Build RDS files | |
| if: steps.cache-rds.outputs.cache-hit != 'true' | |
| run: | | |
| cd tests/rds | |
| R -f generate.R | |
| build_deps: | |
| runs-on: ubuntu-latest | |
| needs: [prepare-version] | |
| container: ghcr.io/kanaverse/emcmake-docker/builder:${{ needs.prepare-version.outputs.version }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Cache installed | |
| id: installed | |
| uses: actions/cache@v4 | |
| with: | |
| path: extern/installed | |
| key: deps-${{ hashFiles('extern/**/build.sh') }}-${{ env.IMAGE_VERSION }} | |
| - name: Build HDF5 | |
| if: steps.installed.outputs.cache-hit != 'true' | |
| run: | | |
| cd extern/hdf5 | |
| ./build.sh | |
| - name: Build igraph | |
| if: steps.installed.outputs.cache-hit != 'true' | |
| run: | | |
| cd extern/igraph | |
| ./build.sh | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [ create_rds, build_deps, prepare-version] | |
| container: ghcr.io/kanaverse/emcmake-docker/builder:${{ needs.prepare-version.outputs.version }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18 | |
| - name: Cache Modules | |
| uses: actions/cache@v4 | |
| with: | |
| path: '**/node_modules' | |
| key: npm-${{ hashFiles('package.json') }} | |
| - name: Update NPM packages | |
| run: npm i --include=dev | |
| - name: Cache installed | |
| uses: actions/cache@v4 | |
| with: | |
| path: extern/installed | |
| key: deps-${{ hashFiles('extern/**/build.sh') }}-${{ env.IMAGE_VERSION }} | |
| - name: Cache RDS files | |
| uses: actions/cache@v4 | |
| with: | |
| path: tests/rds/*.rds | |
| key: rds-${{ hashFiles('tests/rds/generate.R') }} | |
| - name: Cache node build | |
| id: wasm-build | |
| uses: actions/cache@v4 | |
| with: | |
| path: js/wasm | |
| key: wasm-${{ hashFiles('build.sh', 'extern/**/build.sh', 'CMakeLists.txt', 'extern/CMakeLists.txt', 'src/*') }}-${{ env.IMAGE_VERSION }} | |
| - name: Update node build | |
| if: steps.wasm-build.outputs.cache-hit != 'true' | |
| run: bash build.sh main | |
| - name: Check all transitive dependencies are pinned | |
| if: steps.wasm-build.outputs.cache-hit != 'true' | |
| shell: /bin/bash -e {0} | |
| run: | | |
| cat extern/CMakeLists.txt | \ | |
| grep "FetchContent_MakeAvailable" | \ | |
| sed "s/FetchContent_MakeAvailable(//" | \ | |
| sed "s/)//" | \ | |
| tr '[:upper:]' '[:lower:]' | \ | |
| sort > requested.txt | |
| ls build_main/_deps/ | \ | |
| grep "src$" | \ | |
| sed "s/-src//" | \ | |
| sort > observed.txt | |
| diffs=$(diff observed.txt requested.txt ) | |
| if [[ $diffs != '' ]] | |
| then | |
| exit 1 | |
| fi | |
| - name: Run tests | |
| run: | | |
| export CHECK_RDS=1 | |
| npm run test |