Added files for testing CRISPR screening with 10X.

kanaverse · Dec 27, 2022 · 508d1c4 · 508d1c4
1 parent 282b04d
commit 508d1c4
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/10x-crispr/download.sh b/10x-crispr/download.sh
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+#!/bin/bash
+
+curl https://cf.10xgenomics.com/samples/cell-exp/6.0.0/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K_count_sample_feature_bc_matrix.h5 > crispr_6.0.0-tenx.h5
+
+curl https://cf.10xgenomics.com/samples/cell-exp/6.0.0/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K/SC3_v3_NextGem_DI_CRISPR_A549_5K_SC3_v3_NextGem_DI_CRISPR_A549_5K_count_sample_feature_bc_matrix.tar.gz > crispr-mtx.tar.gz
+tar -xvf crispr-mtx.tar.gz
+rm crispr-mtx.tar.gz
+
+mv sample_feature_bc_matrix/barcodes.tsv.gz crispr_6.0.0-barcodes.tsv.gz
+mv sample_feature_bc_matrix/features.tsv.gz crispr_6.0.0-features.tsv.gz
+mv sample_feature_bc_matrix/matrix.mtx.gz crispr_6.0.0-matrix.mtx.gz