GitHub - jueseph/Growth-Curve-Toolkit-Old: A set of functions for loading and analyzing growth curve data from the Envision plate reader.

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A set of functions for loading and analyzing growth curve data from the Envision plate reader.

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
.gitattributes		.gitattributes
.gitignore		.gitignore
README.txt		README.txt
extractSingleTimecourse2.m		extractSingleTimecourse2.m
find_bad_reads.m		find_bad_reads.m
getExperimentInfo.m		getExperimentInfo.m
getRobustGrowthRate.m		getRobustGrowthRate.m
get_strain_groups.m		get_strain_groups.m
get_x_offset.m		get_x_offset.m
getgcalignment.m		getgcalignment.m
growthratefit.m		growthratefit.m
inverse_michaelis_menten.m		inverse_michaelis_menten.m
loadGrowthcurvatronData.m		loadGrowthcurvatronData.m
loadstrainnames.m		loadstrainnames.m
makeStringArray.m		makeStringArray.m
mm_correction.m		mm_correction.m
plot_fitted_line.m		plot_fitted_line.m
plotwells.m		plotwells.m
plotwellsold.m		plotwellsold.m
readEnvisionData2.m		readEnvisionData2.m
readEnvisionDirectory2.m		readEnvisionDirectory2.m
readEnvisionDirectory_old.m		readEnvisionDirectory_old.m
readEnvisionFile.m		readEnvisionFile.m
reformat_ilan_data.m		reformat_ilan_data.m
removegcdatapoint.m		removegcdatapoint.m
renamegcdata.m		renamegcdata.m
setupgridplot.m		setupgridplot.m
subtractbg.m		subtractbg.m

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Growth Curve Toolkit
README

Created 2012/08/17 Jue Wang

This set of .m files contains MATLAB code for processing growth curve data obtained from the Envision plate reader.

This package aims to provide small and modular functions that can be strung together to perform complicated analyses. Functions are provided for basic operations such as loading data, plotting growth curves, and extracting growth rates.