Begin documentation and code cleanup

jordanlab · Sep 16, 2019 · a761b1c · a761b1c
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+   * [pChunks: Plasmid identification and annotation from Illumina reads](#pChunks-Plasmid-identification-and-annotation-from-assemblies)
+   * [Installation](#installation)
+      * [Conda environments](#conda-environments)
+      * [Dependencies](#dependencies)
+         * [Software](#software)
+         * [R packages](#r-packages)
+   * [Quickstart / demo](#quickstart--demo)
+   * [Usage](#usage)
+   * [Using your own data](#using-your-own-data)
+
+<!-- Added by: achande3, at: Thu Sep 12 14:59:55 EDT 2019 -->
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+# pChunks: Plasmid identification and annotation from Illumina reads
+
+
+
+# Installation
+
+## Conda environments
+
+## Dependencies
+
+### Software
+
+### R packages
+
+# Quickstart / demo
+
+# Usage
+
+# Using your own data