This repository contains information regarding the software versions and parameters used in completion of the genome of Streptococcus mutans strain B04Sm5. Sample scripts, including the parameters used in the actual genome assembly, are located in the B04Sm5_genome_tool_parameters.sh file. If you use this information, please cite the publication:
Baker JL, Edlund A. 2020 Composite long- and short-read sequencing delivers a complete genome seuqence of B04Sm5, a reutericyclin- and mutanocyclin-producing strain of Streptococcus mutans. Microbiology Resource Announcements. 9:e01067-20
Tools and versions:
Guppy v4.8.11
kneaddata v0.5.4
Filtlong v0.2.0
Flye v.2.8-b1674
hybridSPAdes v.3.14.0
Unicycler v.0.4.8
Trycycler v.0.3.0
medaka v.1.0.3
Pilon v.1.23