fhir-bulk-data-to-bigquery

Load data from a FHIR Bulk Data API into a BigQuery DataSet

Try it

Prerequisites

• Docker
• Docker Compose
• gcloud, with credentials for a user account or service account configured

Setup

git clone https://github.com/jmandel/fhir-bulk-data-to-bigquery
cd fhir-bulk-data-to-bigquery
docker-compose build

Edit config/servers.json to add details for any server(s) you want to connect to.

Run the loader, specifying a:

• --source matching the name of an entry in your config/servers.json
• --bigquery-dataset specifying the dataset in which you'll create tables
• --gcs-bucket specifying the bucket to which you'll write the data for storage (Warning: Existing .ndjson files will be deleted from your bucket!)

Example

docker-compose run loader \
  --source smart-bulk-data \
  --bigquery-dataset fhir-org-starter-project:bulk_data_smart_100 \
  --gcs-bucket fhir-bulk-data