Table of Contents

1. About The Project
   • Built With
2. Getting Started
   • Prerequisites
   • Installation
3. Usage
4. License
5. Contact

About The Project

DNAnamer is a generalized and extensible methodological framework and analysis toolkit for the supervised classification of DNA sequences based on their N-gram frequency patterns.

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Built With

R version 3.4.2

Getting Started

install.packages("devtools")

library("devtools")

install.packages("remotes")

library("remotes")

install.packages("githubinstall")

library("githubinstall")

remotes::install_git("https://github.com/jmal0403/DNAnamer", dependencies=TRUE, force=TRUE)

library(DNAnamer)

Prerequisites

testthat, knitr, rmarkdown, biomartr, BiocManager, seqinr, fastmap, caret, stringr, dplyr, e1071, pROC, randomForest

Installation

library(jmal0403/DNAnamer)

Usage

Please see wiki.

See the open issues for a code demonstation.

License

Distributed under the MIT License. See LICENSE.txt for more information.

Contact

Author - John Stephen Malamon, Ph.D.

Project Link: https://github.com/jmal0403/DNAnamer

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