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Squashed 'src/externals/pio2/' changes from 7309b9b60..c77a30d95
c77a30d95 Merge pull request ESMCI#1855 from jedwards4b/create_logfile_only_if_loglevel 983bd8e66 only create log files if log level > 0 989e026f5 Merge pull request ESMCI#1854 from jedwards4b/redef_from_def_test 7df2e2afe remove this test, no longer valid 360a360ac Merge pull request ESMCI#1852 from NCAR/ejh_readme af9b0733a commented out test_async_1d ca842d15a commented out test_async_1d 66132141f updating readme 5206ff4c5 updating readme c6fd1755c updating readme 47f466fd1 updating readme 8b2f798a4 Merge pull request ESMCI#1851 from NCAR/ejh_cmake 4ea3f9362 turning on netcdf integration in cmake build 304b7296e Merge pull request ESMCI#1850 from NCAR/ejh_next_1 2123df499 turned test code back on 40d9637c2 Merge pull request ESMCI#1849 from NCAR/ejh_next 582d6f7b6 turned test code back off 0a41fbf89 turned test code back off d7eb8207b turned test code back on 41ac8bc7f turned test code back on 2f90688c7 turned test code back on 9f6b1b5c9 fixed type size in async code 16b469d00 turning test code back on 268c69929 Merge pull request ESMCI#1848 from NCAR/ejh_preprocessor 558f24000 cleanup of automake and pre-processor symbols e8a87005b removed pre-processor symbol USE_NETCDF4 77a31b1bc Merge pull request ESMCI#1844 from NCAR/ejh_no_pnetcdf_build 818eead20 commented out part of tst_async_multi 7b0b78b16 commented out part of tst_async_multi 41ea01e99 commented out part of tst_pio_async 388681f92 commented out part of test_async_1d 34f6b99db fixed no-pnetcdf workflow, renamed ubuntu latest workflow 463e37d4e adding new workflow dddf14773 Merge pull request ESMCI#1843 from NCAR/ejh_warn c95152b6e fixed warnings and netcdf-integration build without pnetcdf 2d0c61c2e Merge pull request ESMCI#1840 from NCAR/ejh_cmake_again_3 444c30dc4 fixing cmake workflow b43e67e44 fixing cmake workflow 42366fb63 Merge pull request ESMCI#1836 from NCAR/ejh_cmake_again dcaba92f8 changed test timeout in cmake 19570c281 fixed code warning, removed print statements from test f632317cd make configure search for netcdf-fortran if --enable-fortran and --enable-netcdf-integration are used 57446873a debug test 9b5964267 add fortran build c6912419b fix paths 3705bbdf2 adding fortran f65e972e4 adding fortran d914a8353 adding cmake build 9accccb00 Merge pull request ESMCI#1835 from NCAR/ejh_cmake_fortran_workflow 27d20a3be try a different cmake? ee9fe1b61 giving up on cmake build for now ebfb0e503 adding another cmake build 8fd204e80 adding another cmake build 219d72fb9 adding another cmake build ed0304884 turned off fortran in cmake build b56162ef1 fixed fortran test 5c34c279f turning on fortran build in cmake workflow ee329568b Merge pull request ESMCI#1833 from NCAR/ejh_ncint_test_2 85f50f29d more testing da6015c2c Merge pull request ESMCI#1831 from NCAR/ejh_ncint_test 11959c931 fixing ncint test for 4.7.4 by commenting out code 8dbde41a0 fixed comment ccbb2302f fix test_darray_multivar3.c 7172df901 turning on netcdf integration in workflow e53623410 Merge pull request ESMCI#1826 from NCAR/ejh_test_more 1eb5a219d working on workflows 40ce8ea26 switching to pnetcdf-1.12.2 593e85371 adding testing 0f0558ffe adding testing 0f3502fa0 adding testing 862538461 Merge pull request ESMCI#1823 from NCAR/ejh_more_tests 71a695cba working on asan build 70066f238 working on asan build b5801cd8b working on asan build 8fd651963 working on asan build a679c5bd5 adding testing with hdf5-1.10.7 3308d5e93 renamed workflow files to reduce confusion f34ef23a9 merged master 0887324d4 fixed warnings, trying to get asan workflow to build 6947e3114 Merge branch 'master' into ejh_more_tests d862880a7 added asan testing e341609e3 Merge pull request ESMCI#1821 from NCAR/ejh_test_on 1464bf0a4 Merge branch 'master' into ejh_test_on ef34338ae fixed test_darray_multivar3.c 2d6de331b fixed test_darray_multivar3.c 1ef9493f0 Merge pull request ESMCI#1820 from NCAR/ejh_default_blocksize 9e492a483 changed default blocksize 36eba03fa Merge pull request ESMCI#1817 from NCAR/ejh_docs c7b3010cc documentation improvements 082fc0f32 documentation improvements cacb65e7b documentation improvements 9548daac5 fixed warnings in code 4200f55a1 Merge pull request ESMCI#1809 from NCAR/ejh_perf_more ce23930d6 now setting chunksizes for netcdf4 performance runs f59373773 whitespace cleanup 6f7a1dcdf fixed mpe problem in test_simple.c 9a669de89 modification to perf program output 9abd0ca71 Merge pull request ESMCI#1806 from NCAR/ejh_perf 329ef8f2d cleanup 9f912f859 merged master be3b13f22 fixes to test_perf2.c 84511247c Merge pull request ESMCI#1805 from NCAR/ejh_fix_test 5df3c5dc6 whitespace cleanup 118e44a76 better async error handling in tests 57c03b9c3 whitespace cleanup 379983a92 more fixes for async test error handling 9bdf340a2 more work on async error handling 25d5bf4f0 more work on async error handling 3b550c794 more work on async error handling f83540176 more work on async error handling bb6adea7f fixed comment b44d3237c better handling for test failure in async tests 40da636a3 added AERR() macro for errors on async tests d8ec81a98 fixed comment 9cec790f1 fixed whitespace issues in pio_error.h d14471895 fix printing of some incorrect error codes in cunit tests 9dad4e97a Merge pull request ESMCI#1802 from jedwards4b/avoid_msg_starving e6fc3e00b clean up test 90f497c14 change waitany to waitsome to avoid message starving 53bdadcbf Merge pull request ESMCI#1800 from NCAR/ejh_docs_2 dd1b8d038 updated documentation and cleaned unneeded preprocessor symbols from test_perf2 and test_async_perf 5d0f8a5b0 Merge pull request ESMCI#1799 from NCAR/ejh_t1 eec9e0b50 stop running test_async_perf with other CMakeList.txt tests c254d12f0 turned off logging in test e86c55cb6 try reducing the size of this test 358e71917 document new error code b51b8324c move large allocate from stack 4f01bc28b fix test 570abae1e add error for rearranger mismatch in async mode 564a15116 fix async_perf test 860f6f99f Merge branch 'more_async_tests' of github.com:jedwards4b/ParallelIO into more_async_tests a8493e337 add test_async_perf to cmake build 66564a550 Merge branch 'master' into more_async_tests 5852d9093 Merge pull request ESMCI#1765 from t-brown/master 40da5e29c add SUBSET rearranger d741f3700 Merge branch 'master' into master 1a3fa8630 Merge pull request ESMCI#1794 from NCAR/ejh_fix_perf 2184073b0 Merge branch 'master' into master 2a2a08dad turned off subset rearrarger in test_async_perf b51f6768c more improvements to performance programs 6a29e16eb merged master f0a9c0ad1 fixing test_async_perf 5ca0b5586 Merge pull request ESMCI#1791 from jedwards4b/async_subset 6b08ffb66 now test both rearrangers in tst_perf2 d956b7904 added commas to output 7e385d133 fix test bbe58daf7 add tests c8f91fbca subset working in async 744b73163 Merge pull request ESMCI#1790 from jedwards4b/add_nf_pio bbb9ed716 remove need for netcdf or pnetcdf fortran libs 53d652ed8 add netcdf fortran build 5d1ca6791 add nf_pio, netcdf now defines cdf5 format 8a0cb4f84 Merge pull request ESMCI#1786 from jedwards4b/sort_only_on_compute 3d49f3008 array sort should only happen on compute tasks 7f28489f5 Merge pull request ESMCI#1784 from jedwards4b/add_async_get_att_test 4b79b0203 add new function to include file 15921d6ff fix documentation biff d937cc331 add global_set_log_level, fix issue 5cd85396f add async test for get_att - test currently timesout 38d9acda5 Merge pull request ESMCI#1782 from jedwards4b/async_fixes ffe4098c1 move malloc to correct location e05d8f2b0 remove unneeded change 7806081b4 changes for async interface 7e242f78b Merge pull request ESMCI#1781 from jedwards4b/with_pnetcdf_cmake 6c4d85875 use WITH_PNETCDF in CMake build f960b3799 Merge branch 'master' into master 1d0dabdf3 Merge pull request ESMCI#1778 from jedwards4b/add_pio_init_async_from_comms 1de5ded13 Merge branch 'add_pio_init_async_from_comms' of github.com:jedwards4b/ParallelIO into add_pio_init_async_from_comms 7a52d1d9d try this 875966b5b fix mem issue 60f9f17f3 fix documentation f63773317 remove .f90.in from gitignore file, add tests cf09cd22d remove unused var 7f28e28cf fix Makefile.am 8af4d74d9 try again 2d3cb219a fix test generation issue 4a012a898 add test to autoconf 155c11dee fix line length issue 01e9e31dd add async test from fortran bcc711331 remove set_log_level from test 8f10a32a2 remove debug print ea404f6b3 add PIOc_init_async_from_comms and test 53c5a2c23 Merge pull request ESMCI#1776 from jedwards4b/update_f_examples 0f5da9dc3 Merge branch 'master' into update_f_examples a8acfd49d more doc cleanup cad018af7 more documentation and refinment 4fd48cfce add some documentation 9e999911c correct ranks in async 0f65ecc0d cleanup a27009b57 working example from fortran 81c778517 Merge pull request ESMCI#1774 from jedwards4b/unique_name_err_buffer e079cb408 make example resultlen distinct names from that in pio_error.h c30ff49c5 make example err_buffers distinct names from that in pio_error.h e26c200c2 work on async interface 092a618ee begin work on fortran async interface 66449308c Merge branch 'master' into master 364a445bf Adding an autoconf check for C99. git-subtree-dir: src/externals/pio2 git-subtree-split: c77a30d95d4814470f569b332cadeb0dea32414f
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