Performace metrics dataframe

jdvelasq · Jan 23, 2025 · fd098e6 · fd098e6
1 parent 2669ce2
commit fd098e6
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Showing 65 changed files with 898 additions and 768 deletions.
diff --git a/sphinx/_generated/analyze/cross_co_occurrence/heatmap.html b/sphinx/_generated/analyze/cross_co_occurrence/heatmap.html
diff --git a/...d/visualize/basic_plots/ranking_plot.html → ...ics/performance_metrics/ranking_plot.html b/...d/visualize/basic_plots/ranking_plot.html → ...ics/performance_metrics/ranking_plot.html
diff --git a/sphinx/_generated/visualize/advanced_plots/bubble_plot.html b/sphinx/_generated/visualize/advanced_plots/bubble_plot.html
diff --git a/sphinx/_generated/visualize/basic_plots/bar_plot.html b/sphinx/_generated/visualize/basic_plots/bar_plot.html
diff --git a/sphinx/_generated/visualize/basic_plots/cleveland_dot_plot.html b/sphinx/_generated/visualize/basic_plots/cleveland_dot_plot.html
diff --git a/sphinx/_generated/visualize/basic_plots/column_plot.html b/sphinx/_generated/visualize/basic_plots/column_plot.html
diff --git a/sphinx/_generated/visualize/basic_plots/line_plot.html b/sphinx/_generated/visualize/basic_plots/line_plot.html
diff --git a/sphinx/_generated/visualize/basic_plots/pie_plot.html b/sphinx/_generated/visualize/basic_plots/pie_plot.html
diff --git a/techminer2/analyze/citation_network/articles/internals/create_citation_nx_graph.py b/techminer2/analyze/citation_network/articles/internals/create_citation_nx_graph.py
@@ -9,7 +9,7 @@
 import networkx as nx  # type: ignore
 import numpy as np
 
-from .....database.load.load__filtered_database import load__filtered_database
+from .....database.load.load__database import load__filtered_database
 
 
 def _create_citation_nx_graph(

diff --git a/techminer2/analyze/citation_network/others/internals/create_citation_nx_graph.py b/techminer2/analyze/citation_network/others/internals/create_citation_nx_graph.py
@@ -9,8 +9,8 @@
 import networkx as nx  # type: ignore
 import numpy as np
 
-from .....database.load.load__filtered_database import load__filtered_database
-from .....database.metrics.performance_metrics.dataframe import (
+from .....database.load.load__database import load__filtered_database
+from .....database.metrics.performance_metrics.data_frame import (
     performance_metrics_frame,
 )
 

diff --git a/techminer2/analyze/co_citation_network/internals/create_co_citation_nx_graph.py b/techminer2/analyze/co_citation_network/internals/create_co_citation_nx_graph.py
@@ -9,7 +9,7 @@
 import networkx as nx  # type: ignore
 import numpy as np
 
-from ....database.load.load__filtered_database import load__filtered_database
+from ....database.load.load__database import load__filtered_database
 
 
 def _create_co_citation_nx_graph(

diff --git a/techminer2/analyze/collaboration/collaboration_metrics_dataframe.py b/techminer2/analyze/collaboration/collaboration_metrics_dataframe.py
@@ -36,7 +36,7 @@
 [5 rows x 6 columns]
     
 """
-from ...database.load.load__filtered_database import load__filtered_database
+from ...database.load.load__database import load__filtered_database
 from ...internals.mt.mt_extract_top_n_terms_by_metric import (
     _mt_extract_top_n_terms_by_metric,
 )

diff --git a/techminer2/analyze/coupling_network/docs/internals/create_coupling_nx_graph.py b/techminer2/analyze/coupling_network/docs/internals/create_coupling_nx_graph.py
@@ -9,7 +9,7 @@
 import networkx as nx  # type: ignore
 import numpy as np
 
-from .....database.load.load__filtered_database import load__filtered_database
+from .....database.load.load__database import load__filtered_database
 
 
 def _create_coupling_nx_graph(

diff --git a/techminer2/analyze/coupling_network/others/internals/create_coupling_nx_graph.py b/techminer2/analyze/coupling_network/others/internals/create_coupling_nx_graph.py
@@ -9,8 +9,8 @@
 import networkx as nx  # type: ignore
 import numpy as np
 
-from .....database.load.load__filtered_database import load__filtered_database
-from .....database.metrics.performance_metrics.dataframe import (
+from .....database.load.load__database import load__filtered_database
+from .....database.metrics.performance_metrics.data_frame import (
     performance_metrics_frame,
 )
 from .....internals.utils.utils_append_occurrences_and_citations_to_axis import (

diff --git a/techminer2/analyze/cross_co_occurrence/dataframe.py b/techminer2/analyze/cross_co_occurrence/dataframe.py
@@ -51,7 +51,7 @@
 
 
 """
-from ...database.load.load__filtered_database import load__filtered_database
+from ...database.load.load__database import load__filtered_database
 from ...database.load.load__user_stopwords import load__user_stopwords
 from ...internals.mt.mt_calculate_global_performance_metrics import (
     _mt_calculate_global_performance_metrics,

diff --git a/techminer2/analyze/main_path_analysis/internals/compute_main_path.py b/techminer2/analyze/main_path_analysis/internals/compute_main_path.py
@@ -14,7 +14,7 @@
 
 import numpy as np
 
-from ....database.load.load__filtered_database import load__filtered_database
+from ....database.load.load__database import load__filtered_database
 
 
 def _compute_main_path(

diff --git a/techminer2/analyze/metrics/__init__.py b/techminer2/analyze/metrics/__init__.py
@@ -1,6 +1,6 @@
 """Metrics menu options"""
 
-from ...database.metrics.performance_metrics.dataframe import performance_metrics_frame
+from ...database.metrics.performance_metrics.data_frame import performance_metrics_frame
 from ..collaboration.collaboration_metrics_dataframe import collaboration_metrics_frame
 from ..collaboration.collaboration_metrics_plot import collaboration_metrics_plot
 from .general_metrics_dataframe import general_metrics_frame

diff --git a/techminer2/analyze/metrics/general_metrics_dataframe.py b/techminer2/analyze/metrics/general_metrics_dataframe.py
@@ -74,7 +74,7 @@
 import numpy as np
 import pandas as pd  # type: ignore
 
-from ...database.load.load__filtered_database import load__filtered_database
+from ...database.load.load__database import load__filtered_database
 
 
 class MainInformation:

diff --git a/techminer2/analyze/metrics/internals/documents_per_item.py b/techminer2/analyze/metrics/internals/documents_per_item.py
@@ -1,6 +1,6 @@
 """documents by each item in a column"""
 
-from ....database.load.load__filtered_database import load__filtered_database
+from ....database.load.load__database import load__filtered_database
 
 
 def documents_per_item(

diff --git a/techminer2/analyze/metrics/tfidf_dataframe.py b/techminer2/analyze/metrics/tfidf_dataframe.py
@@ -58,7 +58,7 @@
 import pandas as pd  # type: ignore
 from sklearn.feature_extraction.text import TfidfTransformer  # type: ignore
 
-from ...database.load.load__filtered_database import load__filtered_database
+from ...database.load.load__database import load__filtered_database
 from ...internals.mt.mt_calculate_global_performance_metrics import (
     _mt_calculate_global_performance_metrics,
 )

diff --git a/techminer2/analyze/metrics/trend_metrics/_compute_trend_metrics.py b/techminer2/analyze/metrics/trend_metrics/_compute_trend_metrics.py
@@ -30,7 +30,7 @@
 
 
 """
-from ....database.load.load__filtered_database import load__filtered_database
+from ....database.load.load__database import load__filtered_database
 
 
 def compute_trend_metrics(

diff --git a/techminer2/analyze/rpys/rpys_frame.py b/techminer2/analyze/rpys/rpys_frame.py
@@ -26,7 +26,7 @@
 """
 import pandas as pd  # type: ignore
 
-from ...database.load.load__filtered_database import load__filtered_database
+from ...database.load.load__database import load__filtered_database
 
 
 def rpys_frame(

diff --git a/techminer2/database/field_extractors/extractors__top_terms.py b/techminer2/database/field_extractors/extractors__top_terms.py
@@ -43,7 +43,7 @@
 
 """
 from ...internals.mixins import InputFunctionsMixin
-from ..load import load__filtered_database
+from ..load import load__database
 from ..metrics.performance_metrics.internals.internal__add_rank_field_by_metrics import (
     internal__add_rank_field_by_metrics,
 )
@@ -72,7 +72,7 @@ class TopTermsExtractor(
 
     def build(self):
 
-        records = load__filtered_database(
+        records = load__database(
             root_dir=self.params.root_dir,
             database=self.params.database,
             record_years_range=self.params.record_years_range,

diff --git a/techminer2/database/field_extractors/internals/internal__get_field_values_from_database.py b/techminer2/database/field_extractors/internals/internal__get_field_values_from_database.py
@@ -8,7 +8,7 @@
 
 from typing import Dict, List, Optional, Tuple
 
-from ...load import load__filtered_database
+from ...load import load__database
 
 
 def internal__get_field_values_from_database(
@@ -24,7 +24,7 @@ def internal__get_field_values_from_database(
 ):
     """Returns a DataFrame with the content of the field in all databases."""
 
-    dataframe = load__filtered_database(
+    dataframe = load__database(
         #
         # DATABASE PARAMS:
         root_dir=root_dir,

diff --git a/techminer2/database/field_extractors/internals/internal__top_terms.py b/techminer2/database/field_extractors/internals/internal__top_terms.py
@@ -9,7 +9,7 @@
 
 from typing import Dict, List, Optional, Tuple
 
-from ...load import load__filtered_database
+from ...load import load__database
 
 
 def internal__top_terms(
@@ -36,7 +36,7 @@ def build_terms_df(
         records_order_by: Optional[str],
         records_match: Optional[Dict[str, List[str]]],
     ):
-        records = load__filtered_database(
+        records = load__database(
             root_dir=root_dir,
             database=database,
             record_years_range=record_years_range,

diff --git a/techminer2/database/load/__init__.py b/techminer2/database/load/__init__.py
@@ -1,9 +1,9 @@
 """Load filtered records from the database."""
 
-from .load__filtered_database import load__filtered_database
+from .load__database import DatabaseLoader
 from .load__user_stopwords import load__user_stopwords
 
 __all__ = [
-    "load__filtered_database",
+    "DatabaseLoader",
     "load__user_stopwords",
 ]
-Original file line number
+Diff line change
@@ Expand Up / @@ -30,7 +30,7 @@ @@
     """
-    from ....database.load.load__filtered_database import load__filtered_database
+    from ....database.load.load__database import load__filtered_database
     def compute_trend_metrics(
@@ Expand Down @@