Issue 10525 add sonar qube code coverage (#10528) #146
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name: Python validator | |
on: [push, pull_request] | |
jobs: | |
build: | |
name: Validate Data | |
runs-on: ubuntu-latest | |
steps: | |
- name: 'Checkout cbioportal repo' | |
uses: actions/checkout@v2 | |
with: | |
path: ./cbioportal | |
- name: 'Checkout core module' | |
uses: actions/checkout@v4 | |
with: | |
path: ./cbioportal/core | |
repository: cBioPortal/cbioportal-core | |
- name: 'Validate tests' | |
working-directory: ./cbioportal | |
run: | | |
docker run -v ${PWD}:/cbioportal python:3.6 /bin/sh -c ' | |
cd /cbioportal && | |
pip install -r requirements.txt && | |
export PYTHONPATH=/cbioportal/core/src/main/resources/scripts && | |
cd /cbioportal/core/src/test/scripts/ && | |
python unit_tests_validate_data.py && | |
python system_tests_validate_data.py && | |
python system_tests_validate_studies.py' |