Merge branch 'matchminer-v2' of https://github.com/jagnathan/cbioport… #138
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| name: Python validator | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Validate Data | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: 'Checkout cbioportal repo' | |
| uses: actions/checkout@v2 | |
| with: | |
| path: ./cbioportal | |
| - name: 'Validate tests' | |
| working-directory: ./cbioportal | |
| run: | | |
| docker run -v ${PWD}:/cbioportal python:3.6 /bin/sh -c ' | |
| cd /cbioportal && | |
| pip install -r requirements.txt && | |
| export PYTHONPATH=/cbioportal/core/src/main/scripts && | |
| cd /cbioportal/core/src/test/scripts/ && | |
| python unit_tests_validate_data.py && | |
| python system_tests_validate_data.py && | |
| python system_tests_validate_studies.py' |