Update for version 0.2.2

iwc-workflows · Dec 20, 2021 · 64ba536 · 64ba536
1 parent 3e57d99
commit 64ba536
Show file tree

Hide file tree

Showing 5 changed files with 42 additions and 7 deletions.
diff --git a/.github/workflows/wftest.yml b/.github/workflows/wftest.yml
@@ -0,0 +1,24 @@
+name: Periodic workflow test
+on:
+  schedule:
+    - cron: '0 3 * * *'
+  workflow_dispatch:
+jobs:
+  setup:
+    name: Setup cache
+    uses: galaxyproject/iwc/.github/workflows/setup.yml@main
+    with:
+      python-version-list: "[\"3.7\"]"
+      galaxy-fork: galaxyproject
+      galaxy-branch: master
+  test:
+    name: Test workflow
+    needs: setup
+    uses: galaxyproject/iwc/.github/workflows/test_workflows.yml@main
+    with:
+      galaxy-head-sha: ${{ needs.setup.outputs.galaxy-head-sha }}
+      python-version-list: "[\"3.7\"]"
+      galaxy-fork: galaxyproject
+      galaxy-branch: master
+      repository-list: '.'
+      check-outputs: true
diff --git a/.workflowhub.yml b/.workflowhub.yml
@@ -0,0 +1,5 @@
+version: '0.1'
+registries:
+- url: https://workflowhub.eu
+  project: iwc
+  workflow: sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.2.2] 2021-12-13
+
+### Added
+- Added GitHub Actions workflow. No functional changes.
+
 ## [0.2.1] 2021-07-23
 
 ### Added

diff --git a/pe-wgs-variation.ga b/pe-wgs-variation.ga
@@ -11,7 +11,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "COVID-19: variation analysis on WGS PE data",
-    "release": "0.2.1",
+    "release": "0.2.2",
     "steps": {
         "0": {
             "annotation": "Illumina reads with fastqsanger encoding",

diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
@@ -21,7 +21,7 @@
         {
             "@id": "./",
             "@type": "Dataset",
-            "datePublished": "2021-07-26T10:22:23.311704",
+            "datePublished": "2021-12-20T17:04:47.636637",
             "hasPart": [
                 {
                     "@id": "pe-wgs-variation.ga"
@@ -42,7 +42,8 @@
                 {
                     "@id": "#test1"
                 }
-            ]
+            ],
+            "name": "sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA"
         },
         {
             "@id": "ro-crate-metadata.json",
@@ -66,12 +67,12 @@
                     "@id": "https://orcid.org/0000-0002-9464-6640"
                 }
             ],
-            "name": "COVID-19: variation analysis on WGS PE data",
+            "name": "sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA",
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
             "url": "https://github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling",
-            "version": "0.2.1"
+            "version": "0.2.2"
         },
         {
             "@id": "#galaxy",
@@ -114,7 +115,7 @@
             "@id": "#test1_1",
             "@type": "TestInstance",
             "name": "test1_1",
-            "resource": "repos/galaxyproject/iwc/actions/workflows/workflow_test.yml",
+            "resource": "repos/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling/actions/workflows/wftest.yml",
             "runsOn": {
                 "@id": "https://w3id.org/ro/terms/test#GithubService"
             },
@@ -137,7 +138,7 @@
             "conformsTo": {
                 "@id": "https://w3id.org/ro/terms/test#PlanemoEngine"
             },
-            "engineVersion": ">=0.74.6"
+            "engineVersion": ">=0.74.9"
         },
         {
             "@id": "https://w3id.org/ro/terms/test#PlanemoEngine",