Update for version 0.1.4

iwc-workflows · Nov 16, 2023 · bf98966 · bf98966
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## [0.1.4] 2023-11-15
+
+### Added
+
+- more descriptive labels for inputs
+
 ## [0.1.3] 2023-11-09
 ### Automatic update
 - `toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2`

diff --git a/kmer-profiling-hifi-VGP1.ga b/kmer-profiling-hifi-VGP1.ga
@@ -14,27 +14,27 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.1.3",
+    "release":"0.1.4",
     "name": "kmer-profiling-hifi-VGP1",
     "steps": {
         "0": {
-            "annotation": "",
+            "annotation": "A simple list collection containing PacBio data in either fastq or fasta format",
             "content_id": null,
             "errors": null,
             "id": 0,
             "input_connections": {},
             "inputs": [
                 {
-                    "description": "",
+                    "description": "A simple list collection containing PacBio data in either fastq or fasta format",
                     "name": "Collection of Pacbio Data"
                 }
             ],
             "label": "Collection of Pacbio Data",
             "name": "Input dataset collection",
             "outputs": [],
             "position": {
-                "left": 0,
-                "top": 15.427657616021285
+                "left": 0.0,
+                "top": 86.5078125
             },
             "tool_id": null,
             "tool_state": "{\"optional\": false, \"tag\": \"\", \"collection_type\": \"list\"}",
@@ -60,43 +60,55 @@
             "name": "Input parameter",
             "outputs": [],
             "position": {
-                "left": 22.121832152706936,
-                "top": 151.04017592656817
+                "left": 17.57421875,
+                "top": 226.734375
             },
             "tool_id": null,
             "tool_state": "{\"default\": 21, \"parameter_type\": \"integer\", \"optional\": true}",
             "tool_version": null,
             "type": "parameter_input",
             "uuid": "946bcadd-8ab0-4595-9985-abb574539844",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "18b69ad3-4c09-46f5-9a4c-bf4097b37fef"
+                }
+            ]
         },
         "2": {
-            "annotation": "",
+            "annotation": "Ploidy for the organism being assembled",
             "content_id": null,
             "errors": null,
             "id": 2,
             "input_connections": {},
             "inputs": [
                 {
-                    "description": "",
+                    "description": "Ploidy for the organism being assembled",
                     "name": "Ploidy"
                 }
             ],
             "label": "Ploidy",
             "name": "Input parameter",
             "outputs": [],
             "position": {
-                "left": 65.68433215270693,
-                "top": 283.0276637195369
+                "left": 50.12890625,
+                "top": 342.609375
             },
             "tool_id": null,
             "tool_state": "{\"default\": 2, \"parameter_type\": \"integer\", \"optional\": true}",
             "tool_version": null,
             "type": "parameter_input",
             "uuid": "e3848560-55a2-42a5-ac1a-487ccf084d92",
             "when": null,
-            "workflow_outputs": []
+            "workflow_outputs": [
+                {
+                    "label": null,
+                    "output_name": "output",
+                    "uuid": "1fea95fa-67d6-408d-94b6-264107cc19a1"
+                }
+            ]
         },
         "3": {
             "annotation": "",
@@ -123,8 +135,8 @@
                 }
             ],
             "position": {
-                "left": 300.9374263897614,
-                "top": 16.412041203882488
+                "left": 296.8668759977911,
+                "top": 27
             },
             "post_job_actions": {
                 "HideDatasetActionread_db": {
@@ -168,8 +180,8 @@
                 }
             ],
             "position": {
-                "left": 569.718710741206,
-                "top": 143.25579365755715
+                "left": 576.8668759977911,
+                "top": 0
             },
             "post_job_actions": {
                 "TagDatasetActionread_db": {
@@ -221,8 +233,8 @@
                 }
             ],
             "position": {
-                "left": 859.375,
-                "top": 92.34016036987308
+                "left": 856.8668759977911,
+                "top": 42
             },
             "post_job_actions": {
                 "HideDatasetActionread_db_hist": {
@@ -298,8 +310,8 @@
                 }
             ],
             "position": {
-                "left": 1198.9374694824219,
-                "top": 0.0
+                "left": 1136.866875997791,
+                "top": 15
             },
             "post_job_actions": {
                 "TagDatasetActionlinear_plot": {
@@ -365,6 +377,11 @@
             "uuid": "955de351-ef19-42dc-89d7-ca213994515a",
             "when": null,
             "workflow_outputs": [
+                {
+                    "label": "GenomeScope linear plot",
+                    "output_name": "linear_plot",
+                    "uuid": "57230be4-36d5-4307-b4b0-b8a73f6800ce"
+                },
                 {
                     "label": "GenomeScope transformed linear plot",
                     "output_name": "transformed_linear_plot",
@@ -389,11 +406,6 @@
                     "label": "GenomeScope log plot",
                     "output_name": "log_plot",
                     "uuid": "988e2189-d5f2-4e9e-8fc2-4434e68e8501"
-                },
-                {
-                    "label": "GenomeScope linear plot",
-                    "output_name": "linear_plot",
-                    "uuid": "57230be4-36d5-4307-b4b0-b8a73f6800ce"
                 }
             ]
         }
@@ -402,6 +414,6 @@
         "Reviewed",
         "VGP"
     ],
-    "uuid": "a3ef9c73-c661-46af-bfde-3daa97d8b473",
-    "version": 2
+    "uuid": "7542ffba-d083-415e-b745-08d9503debc4",
+    "version": 4
 }
diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
@@ -4,7 +4,7 @@
         {
             "@id": "./",
             "@type": "Dataset",
-            "datePublished": "2023-11-09T11:09:07.998474",
+            "datePublished": "2023-11-16T14:32:18.217599",
             "hasPart": [
                 {
                     "@id": "kmer-profiling-hifi-VGP1.ga"
@@ -42,15 +42,15 @@
                     "@id": "https://vertebrategenomeproject.org"
                 },
                 {
-                    "@id": "#72911fc7-3a6d-4e44-becb-7a5a864c18d8"
+                    "@id": "#cbfa54c5-09f3-4dbe-b222-17ac12ff938a"
                 }
             ],
             "name": "kmer-profiling-hifi-VGP1/main",
             "programmingLanguage": {
                 "@id": "#galaxy"
             },
             "url": "https://github.com/iwc-workflows/kmer-profiling-hifi-VGP1",
-            "version": "0.1.3"
+            "version": "0.1.4"
         },
         {
             "@id": "#galaxy",
@@ -70,7 +70,7 @@
             "name": "VGP"
         },
         {
-            "@id": "#72911fc7-3a6d-4e44-becb-7a5a864c18d8",
+            "@id": "#cbfa54c5-09f3-4dbe-b222-17ac12ff938a",
             "@type": "Organization",
             "name": "Galaxy"
         },