Update for version 0.4

iwc-workflows · Jan 16, 2023 · a465610 · a465610
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.4] 2023-01-16
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1`
+
 ## [0.3] 2022-12-17
 
 ### Automatic update

diff --git a/atacseq.ga b/atacseq.ga
@@ -10,7 +10,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.3",
+    "release": "0.4",
     "name": "ATACseq",
     "steps": {
         "0": {
@@ -225,7 +225,7 @@
         },
         "5": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1",
             "errors": null,
             "id": 5,
             "input_connections": {
@@ -236,7 +236,7 @@
             },
             "inputs": [],
             "label": "filter MAPQ30 concordant pairs and not mitochondrial pairs",
-            "name": "Filter",
+            "name": "Filter BAM",
             "outputs": [
                 {
                     "name": "out_file2",
@@ -270,15 +270,15 @@
                     "output_name": "out_file1"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "1dfd95ee241e",
+                "changeset_revision": "108db6635177",
                 "name": "bamtools_filter",
                 "owner": "devteam",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"conditions\": [{\"__index__\": 0, \"filters\": [{\"__index__\": 0, \"bam_property\": {\"bam_property_selector\": \"mapQuality\", \"__current_case__\": 14, \"bam_property_value\": \">=30\"}}, {\"__index__\": 1, \"bam_property\": {\"bam_property_selector\": \"isProperPair\", \"__current_case__\": 11, \"bam_property_value\": \"true\"}}, {\"__index__\": 2, \"bam_property\": {\"bam_property_selector\": \"reference\", \"__current_case__\": 20, \"bam_property_value\": \"!chrM\"}}, {\"__index__\": 3, \"bam_property\": {\"bam_property_selector\": \"mateReference\", \"__current_case__\": 16, \"bam_property_value\": \"!MT\"}}]}], \"input_bam\": {\"__class__\": \"ConnectedValue\"}, \"rule_configuration\": {\"rules_selector\": \"false\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "2.5.1+galaxy0",
+            "tool_version": "2.5.2+galaxy1",
             "type": "tool",
             "uuid": "eba4c413-30c9-4bab-a088-dc12d5956c91",
             "workflow_outputs": []

diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
@@ -21,7 +21,7 @@
         {
             "@id": "./",
             "@type": "Dataset",
-            "datePublished": "2023-01-13T13:28:37.647185",
+            "datePublished": "2023-01-16T17:00:18.505110",
             "hasPart": [
                 {
                     "@id": "atacseq.ga"
@@ -72,7 +72,7 @@
                 "@id": "#galaxy"
             },
             "url": "https://github.com/iwc-workflows/atacseq",
-            "version": "0.3"
+            "version": "0.4"
         },
         {
             "@id": "#galaxy",