Update for version 0.13

iwc-workflows · Apr 9, 2024 · 9ae67f2 · 9ae67f2
1 parent a031f24
commit 9ae67f2
Show file tree

Hide file tree

Showing 3 changed files with 26 additions and 20 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## [0.13] 2024-04-08
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`
+- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`
+
 ## [0.12] 2024-03-25
 
 ### Automatic update

diff --git a/atacseq.ga b/atacseq.ga
@@ -10,7 +10,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.12",
+    "release": "0.13",
     "name": "ATACseq",
     "steps": {
         "0": {
@@ -446,7 +446,7 @@
         },
         "9": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "errors": null,
             "id": 9,
             "input_connections": {
@@ -475,15 +475,15 @@
                     "output_name": "outfile"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "12615d397df7",
+                "changeset_revision": "fbf99087e067",
                 "name": "text_processing",
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"code\": \" ($1==\\\"chrM\\\" || $1 == \\\"MT\\\"){print $1, $3}($1!=\\\"chrM\\\" && $1!=\\\"MT\\\"){SUM+=$3}END{print \\\"others\\\", SUM} \", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "9.3+galaxy0",
+            "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "9ae38aa6-511d-4ab4-b055-7a1dae65649f",
             "when": null,
@@ -942,7 +942,7 @@
         },
         "17": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1",
             "errors": null,
             "id": 17,
             "input_connections": {
@@ -980,15 +980,15 @@
                     "output_name": "output"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "12615d397df7",
+                "changeset_revision": "fbf99087e067",
                 "name": "text_processing",
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"case_sensitive\": \"-i\", \"color\": \"NOCOLOR\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"invert\": \"\", \"lines_after\": \"0\", \"lines_before\": \"0\", \"regex_type\": \"-P\", \"url_paste\": \"^#\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "9.3+galaxy0",
+            "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "a12ee458-2fe0-4d1e-8df9-c8fc76d7b277",
             "when": null,
@@ -1268,7 +1268,7 @@
         },
         "23": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "errors": null,
             "id": 23,
             "input_connections": {
@@ -1306,15 +1306,15 @@
                     "output_name": "outfile"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "12615d397df7",
+                "changeset_revision": "fbf99087e067",
                 "name": "text_processing",
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"code\": \"{S=S+$4}END{print S}\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "9.3+galaxy0",
+            "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "f65b3936-595c-4ddb-88bc-2cc41e514e38",
             "when": null,
@@ -1455,7 +1455,7 @@
         },
         "27": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "errors": null,
             "id": 27,
             "input_connections": {
@@ -1484,15 +1484,15 @@
                     "output_name": "outfile"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "12615d397df7",
+                "changeset_revision": "fbf99087e067",
                 "name": "text_processing",
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"code\": \" NR==1{print \\\"in peaks\\\",$1;inp=$1}NR==2{print \\\"outside peaks\\\",$1 - inp}\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "9.3+galaxy0",
+            "tool_version": "9.3+galaxy1",
             "type": "tool",
             "uuid": "7fe2bb35-31b5-4da0-83cf-38bb4af2848e",
             "when": null,

diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
@@ -21,7 +21,7 @@
         {
             "@id": "./",
             "@type": "Dataset",
-            "datePublished": "2024-03-25T09:46:47.919660",
+            "datePublished": "2024-04-09T08:42:44.209401",
             "hasPart": [
                 {
                     "@id": "atacseq.ga"
@@ -72,7 +72,7 @@
                 "@id": "#galaxy"
             },
             "url": "https://github.com/iwc-workflows/atacseq",
-            "version": "0.12"
+            "version": "0.13"
         },
         {
             "@id": "#galaxy",
@@ -138,7 +138,7 @@
             "conformsTo": {
                 "@id": "https://w3id.org/ro/terms/test#PlanemoEngine"
             },
-            "engineVersion": ">=0.75.21"
+            "engineVersion": ">=0.75.22"
         },
         {
             "@id": "https://w3id.org/ro/terms/test#PlanemoEngine",