Analyze midsagittal lesion length and width #96
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… compute the midsagittal lesion length and width.
… we use '-ofolder' for sct_analyze_lesion, then QC report fails.
…e previous commit
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… metal artifacts See comments in the following PR for context: #96
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As the C-A model does not perform well on lumbar images with metal artifacts, I dropped it in 3a88281. The further analysis will continue with the SCIsegV2 model only. For context, see the hidden comments above and sct-pipeline/contrast-agnostic-softseg-spinalcord#118. |
…ecause if SCIseg predictions no lesion, it finished with a QC error and GT masks are not analyzed at all
… Bland-Altman plots
'width_midsagittal_slice' --> 'width_interpolated_midsagittal_slice'
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Self-reviewed --> merging to be able to create a new release related to the ISMRM 2025 submission |
valosekj
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jv/ismrm_2025-midsagittal_lesion_length_and_width
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This PR adds a codebase to compare the midsagittal lesion length and width computed using different methods (GT vs SCIsegV2; master vs PR4656).
For details, visit this README.
Related SCT branch: spinalcordtoolbox/spinalcordtoolbox#4656