Merge branch 'master' of https://github.com/ipeaGIT/r5r

.github/workflows/java-r5rcore-build.yaml

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+name: Java R5RCore build
+
+on:
+  push:
+    paths:
+      - java-r5rcore/**
+      - .github/workflows/java-r5rcore-build.yaml
+
+jobs:
+  build:
+    env:
+      GH_TOKEN: ${{ github.token }}
+
+    runs-on: ubuntu-latest
+
+    # don't build on merges to master
+    if: ${{ !github.ref_protected }}
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - name: Install R packages
+        run: |
+          install.packages(c('devtools', 'remotes'))
+          remotes::install_deps(dependencies = TRUE)
+        shell: Rscript {0}
+        working-directory: r-package
+
+      - name: Install system dependencies
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+        working-directory: r-package
+
+      - name: Set up JDK 11
+        uses: actions/setup-java@v3
+        with:
+          java-version: '11'
+          distribution: 'temurin'
+      - name: Validate Gradle wrapper
+        uses: gradle/wrapper-validation-action@ccb4328a959376b642e027874838f60f8e596de3
+      - name: Build with Gradle
+        uses: gradle/gradle-build-action@749f47bda3e44aa060e82d7b3ef7e40d953bd629
+        with:
+          arguments: build
+          build-root-directory: java-r5rcore
+
+      - name: Create pull request
+        # https://github.com/actions/checkout/pull/1184
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          mv java-r5rcore/build/libs/java-r5rcore-*.jar r-package/inst/jar/r5r.jar
+          git add r-package/inst/jar/r5r.jar
+          git commit -m "Rebuild JAR for commit ${GITHUB_SHA}"
+          git push

java-r5rcore/.gitignore

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+.idea
+.gradle
+build

java-r5rcore/build.gradle

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+plugins {
+    id 'java'
+}
+
+group 'org.ipea'
+version '1.0.2-SNAPSHOT'
+
+// Build against the version of R5 that the current r5r download_r5 function will
+// grab
+def baos = new ByteArrayOutputStream()
+exec {
+    commandLine 'R', '--no-save', '-q', '-s', '-e', 'setwd("../r-package"); devtools::load_all(quiet=T); cat(download_r5());'
+    standardOutput = baos
+}
+def r5Path = baos.toString()
+
+def rjava_baos = new ByteArrayOutputStream()
+exec {
+    commandLine 'R', '--no-save', '-q', '-s', '-e', 'cat(system.file("jri/JRI.jar", package="rJava"))'
+    standardOutput = rjava_baos
+}
+def rJavaPath = rjava_baos.toString()
+
+println(rJavaPath)
+
+sourceSets {
+    main {
+        java {
+            srcDirs = ['src']
+        }
+    }
+}
+
+dependencies {
+    implementation files(r5Path)
+    implementation files(rJavaPath)
+}

java-r5rcore/gradle/wrapper/gradle-wrapper.properties

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+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.0-bin.zip
+networkTimeout=10000
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists