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Closes #382

Closes #382 #531

on:
push:
paths:
- r-package/**
branches:
- dev
- main
- master
pull_request:
paths:
- r-package/**
branches:
- dev
- main
- master
name: test-coverage
jobs:
test-coverage:
runs-on: ubuntu-20.04
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v2
- uses: r-lib/actions/setup-pandoc@v1
- name: Java setup
uses: actions/setup-java@v1
with:
java-version: '21'
java-package: jdk
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), "../.github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), "../.github/R-version")
shell: Rscript {0}
working-directory: r-package
- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install system dependencies
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
working-directory: r-package
- name: Install dependencies
run: |
install.packages(c("remotes"))
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("covr")
shell: Rscript {0}
working-directory: r-package
- name: Test coverage
run: covr::codecov()
shell: Rscript {0}
working-directory: r-package