Fixing generation of output csv files. #4

	name: Java R5RCore build

	on:
	push:
	paths:
	- java-r5rcore/**
	- .github/workflows/java-r5rcore-build.yaml

	jobs:
	build:
	env:
	GH_TOKEN: ${{ github.token }}

	runs-on: ubuntu-latest

	# don't build on merges to master
	if: ${{ !github.ref_protected }}

	steps:
	- uses: actions/checkout@v3
	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install R packages
	run: \|
	install.packages(c('devtools', 'remotes'))
	remotes::install_deps(dependencies = TRUE)
	shell: Rscript {0}
	working-directory: r-package

	- name: Install system dependencies
	run: \|
	while read -r cmd
	do
	eval sudo $cmd
	done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
	working-directory: r-package

	- name: Set up JDK 11
	uses: actions/setup-java@v3
	with:
	java-version: '11'
	distribution: 'temurin'
	- name: Validate Gradle wrapper
	uses: gradle/wrapper-validation-action@ccb4328a959376b642e027874838f60f8e596de3
	- name: Build with Gradle
	uses: gradle/gradle-build-action@749f47bda3e44aa060e82d7b3ef7e40d953bd629
	with:
	arguments: build
	build-root-directory: java-r5rcore

	- name: Create pull request
	# https://github.com/actions/checkout/pull/1184
	run: \|
	git config user.name "github-actions[bot]"
	git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
	mv java-r5rcore/build/libs/java-r5rcore-*.jar r-package/inst/jar/r5r.jar
	git add r-package/inst/jar/r5r.jar
	git commit -m "Rebuild JAR for commit ${GITHUB_SHA}"
	git push

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