updated_dois #1344
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI Build | |
| on: | |
| push: | |
| pull_request: | |
| types: [opened, reopened] | |
| jobs: | |
| thorough_check: | |
| name: Thorough code check / python-3.9 / ubuntu-latest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Python info | |
| run: | | |
| which python | |
| python --version | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Show pip list | |
| run: | | |
| pip list | |
| - name: Run test with coverage | |
| run: pytest --cov --cov-report term --cov-report xml -m "not integration" | |
| - name: Check style against standards using prospector | |
| run: prospector -o grouped -o pylint:pylint-report.txt --ignore-paths notebooks | |
| - name: Check whether import statements are used consistently | |
| run: isort --check-only --diff . | |
| - name: SonarCloud Scan | |
| uses: sonarsource/sonarcloud-github-action@master | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| basic_checks: | |
| name: Basic code checks / python-${{ matrix.python-version }} / ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest', 'windows-latest'] | |
| python-version: ['3.9', '3.10'] | |
| exclude: | |
| # already tested in first_check job | |
| - python-version: 3.9 | |
| os: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Python info | |
| run: | | |
| which python | |
| python --version | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Show pip list | |
| run: | | |
| pip list | |
| - name: Run tests | |
| run: | | |
| pytest -m "not integration" | |
| integration_checks: | |
| name: Integration code checks / python-${{ matrix.python-version }} / ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.9'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Python info | |
| run: | | |
| which python | |
| python --version | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Show pip list | |
| run: | | |
| pip list | |
| - name: Run tests | |
| run: | | |
| pytest -m "integration" | |
| yml_checks: | |
| name: envionment.yml checks / python-${{ matrix.python-version }} / ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: ms2query | |
| environment-file: ./environment.yml | |
| python-version: 3.9 | |
| - name: activate conda environment | |
| run: | | |
| conda activate ms2query | |
| - name: Show conda list | |
| run: | | |
| conda info | |
| conda list | |
| - name: Run tests | |
| run: | | |
| pytest -m "not integration" |