Merge pull request #46 from invitae/biocommons-sync-2

Resolve conflicts with biocommons

README.md

@@ -10,7 +10,7 @@ aligning the same transcript to multiple references using multiple
 alignment methods. Specifically, it facilitates the following:
 
 -   Querying for multiple transcript sources through a single interface
--   Interpretating variants reported in literature against obsolete
+-   Interpreting variants reported in literature against obsolete
     transcript records
 -   Identifying regions where transcript and reference genome sequence
     assemblies disagree
@@ -243,11 +243,13 @@ the installation environment.*
     uta_admin are likely to ease installation.
 
         $ createuser -U postgres uta_admin
+        $ createuser -U postgres anonymous
         $ createdb -U postgres -O uta_admin uta
 
 3.  Restore the database.
 
-        $ gzip -cdq uta_20150827.pgd.gz | psql -U uta_admin -1 -v ON_ERROR_STOP=1 -d uta -Eae
+        $ uta_v=uta_20210129b
+        $ gzip -cdq $uta_v.pgd.gz | psql -U uta_admin -1 -v ON_ERROR_STOP=1 -d uta -Eae
 
 ## Developer Setup
 

misc/docker/load-uta.sh

@@ -50,7 +50,7 @@ gzip -cdq < "${UTA_PGD_FN}" \
 
 gzip -cdq < "${UTA_PGD_FN}" \
     | perl -n \
-	   -e 'm/CREATE SCHEMA (uta_\d+)/ && print("ALTER DATABASE :DBNAME SET search_path=$1;\n");' \
+	   -e 'm/CREATE SCHEMA (uta_[\d\w]+)/ && print("ALTER DATABASE :DBNAME SET search_path=$1;\n");' \
 	   -e 'print if s/CREATE MATERIALIZED VIEW (.\S+) AS/REFRESH MATERIALIZED VIEW $1;/' \
     | psql -1e -U uta_admin -d uta -v ON_ERROR_STOP=1