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docs(IPVC-2331): update README
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sptaylor committed Apr 12, 2024
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Expand Up @@ -359,7 +359,7 @@ UTA_ETL_SKIP_GENE_LOAD=true docker compose run uta-load

#### 2C. Manual splign transcripts
To load splign-manual transcripts, the workflow expects an input txdata.yaml file and splign alignments. Define this path
using the environment variable $UTA_SPLIGN_MANUAL_DIR:
using the environment variable $UTA_SPLIGN_MANUAL_DIR. These file paths should exist:
- `$UTA_SPLIGN_MANUAL_DIR/splign-manual/txdata.yaml`
- `$UTA_SPLIGN_MANUAL_DIR/splign-manual/alignments/*.splign`

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