You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
There is a bug in the way the 'badframes' / 'exptQC' arrays are being read by the suite2p task. The reason for my suspicion is that in at least one session (SP035\2023-03-01\001) the original mat files (concatenated) don't correspond to the alf files that are output.
[...]
there are 3 consecutive bouts here. Could it be that the concatenation of the data is done in the wrong order? It looks to me like the resulting output is [2,1,0] rather than [0,1,2]?
[...]
If this is indeed the case this needs to be resolved asap and all suite2p tasks with >1 imaging bout need to be re-run. Right now the QC + badframes reported by the experimenter are not actually being taken into account for ROI detection in suite2p, so the ROIs can't be trusted. In fact I only looked into this because the ROIs in this particular session looked weird...
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: