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Clean up documentation #849

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Apr 8, 2024
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8278931
Inherit changes from formatters
edelarua Mar 11, 2024
ec6dc91
00tabletrees
edelarua Mar 11, 2024
f03f77b
General argument conventions
edelarua Mar 11, 2024
1fc4973
Add package documentation page
edelarua Mar 11, 2024
100fa03
Layouting function argument conventions
edelarua Mar 11, 2024
5248888
Constructor arguments
edelarua Mar 11, 2024
df7c2ac
Compatibility arguments
edelarua Mar 11, 2024
55b574c
Split function arguments
edelarua Mar 11, 2024
edc8583
as_html
edelarua Mar 11, 2024
86897fd
colby_constructors
edelarua Mar 12, 2024
82b725b
compare_rtables
edelarua Mar 22, 2024
e48d405
Remove deprecated functions
edelarua Mar 22, 2024
2a2af46
make_split_fun
edelarua Mar 22, 2024
af702d5
More doc updates
edelarua Mar 22, 2024
f012b51
Remove deprecated summarize_rows, update summary docs
edelarua Apr 3, 2024
173fb36
tree_accessors
edelarua Apr 3, 2024
517b168
tt_afun_utils
edelarua Apr 3, 2024
670c8d4
tt_compare_tables
edelarua Apr 4, 2024
ad0f525
tt_compatibility
edelarua Apr 4, 2024
5256ad0
tt_dotabulation
edelarua Apr 4, 2024
bf2c926
tt_export
edelarua Apr 4, 2024
019ba8b
tt_from_df
edelarua Apr 4, 2024
338c5ff
tt_paginate
edelarua Apr 4, 2024
01d8b7f
tt_pos_and_access
edelarua Apr 4, 2024
caaf269
tt_sort
edelarua Apr 4, 2024
7996f51
tt_toString
edelarua Apr 4, 2024
974e6b9
utils
edelarua Apr 4, 2024
114b643
Remaining functions
edelarua Apr 4, 2024
15eca16
Merge branch 'main' into 848_clean_up_docs@main
edelarua Apr 4, 2024
4a65581
Fix DESCRIPTION
edelarua Apr 4, 2024
17cdd74
Fix DESCRIPTION
edelarua Apr 4, 2024
8d0c552
[skip style] [skip vbump] Restyle files
github-actions[bot] Apr 4, 2024
902355f
character(1) -> string, logical(1) -> flag
edelarua Apr 5, 2024
9b1d6a5
Update param types
edelarua Apr 5, 2024
5e781cd
Organize argument_conventions file
edelarua Apr 5, 2024
0f72010
Fix arg inherits
edelarua Apr 5, 2024
55b9b6b
Fix checks
edelarua Apr 5, 2024
487412d
[skip style] [skip vbump] Restyle files
github-actions[bot] Apr 5, 2024
6506489
Remove unused helper functions to improve test coverage
edelarua Apr 5, 2024
530e079
Fix checks
edelarua Apr 5, 2024
810a9c2
[skip style] [skip vbump] Restyle files
github-actions[bot] Apr 5, 2024
7795f45
Empty commit
edelarua Apr 5, 2024
b47cb30
Updates after review
edelarua Apr 8, 2024
e26373b
[skip style] [skip vbump] Restyle files
github-actions[bot] Apr 8, 2024
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Empty commit
edelarua Apr 8, 2024
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8 changes: 2 additions & 6 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -29,10 +29,6 @@
~$
^vignettes/dev-guide$
pkgdown
inst/extdata/Advanced_rtables_part1.pdf
inst/extdata/Advances_rtables_part2.pdf
inst/extdata/Clinical_Trial_Reporting_Tables_in_R.pdf
inst/extdata/r_adoption_slides.pdf
inst/cheatsheet/Cheatsheet_v1-rtables.pdf
inst/cheatsheet/Cheatsheet_v1-rtables.pptx
^inst/extdata$
^inst/cheatsheet$
^pkgdown$
9 changes: 5 additions & 4 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ Suggests:
dplyr (>= 1.0.5),
flextable (>= 0.8.4),
knitr (>= 1.42),
lifecycle (>= 0.2.0),
officer (>= 0.5.0),
r2rtf (>= 0.3.2),
rmarkdown (>= 2.19),
Expand All @@ -58,9 +59,9 @@ VignetteBuilder:
Config/Needs/verdepcheck: insightsengineering/formatters,
tidyverse/magrittr, mllg/checkmate, rstudio/htmltools,
gagolews/stringi, tidymodels/broom, cran/car, tidyverse/dplyr,
davidgohel/flextable, yihui/knitr, davidgohel/officer, Merck/r2rtf,
rstudio/rmarkdown, r-lib/testthat, tidyverse/tibble, tidyverse/tidyr, r-lib/withr,
r-lib/xml2
davidgohel/flextable, yihui/knitr, r-lib/lifecycle, davidgohel/officer,
Merck/r2rtf, rstudio/rmarkdown, r-lib/testthat, tidyverse/tibble,
tidyverse/tidyr, r-lib/withr, r-lib/xml2
Encoding: UTF-8
Language: en-US
LazyData: true
Expand All @@ -74,14 +75,14 @@ Collate:
'utils.R'
'colby_constructors.R'
'compare_rtables.R'
'deprecated.R'
'format_rcell.R'
'indent.R'
'make_subset_expr.R'
'simple_analysis.R'
'split_funs.R'
'make_split_fun.R'
'summary.R'
'package.R'
'tree_accessors.R'
'tt_afun_utils.R'
'tt_compare_tables.R'
Expand Down
2 changes: 0 additions & 2 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -168,7 +168,6 @@ export(split_rows_by_multivar)
export(split_rows_by_quartiles)
export(str)
export(summarize_row_groups)
export(summarize_rows)
export(table_shell)
export(table_shell_str)
export(table_structure)
Expand All @@ -181,7 +180,6 @@ export(trim_levels_in_facets)
export(trim_levels_in_group)
export(trim_levels_to_map)
export(trim_rows)
export(trim_zero_rows)
export(tt_at_path)
export(tt_to_flextable)
export(update_ref_indexing)
Expand Down
3 changes: 3 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,9 @@
* Fixed `sort_at_path` pathing to ignore leading `"root"` element (regardless of actual root element name) to match current `tt_at_path` behavior.
* Fixed `section_div` for analysis of multiple variables (`AnalyzeMultiVars`).

### Miscellaneous
* Removed deprecated functions `add_analyzed_var` and `trim_zero_rows`.

## rtables 0.6.6
### New Features
* Removed `ref_group` reordering in column splits so not to change the order.
Expand Down
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