lintr #1050
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - devel | |
| - stable | |
| - release/* | |
| - feature/* | |
| pull_request: | |
| branches: | |
| - devel | |
| name: R-CMD-check-no-suggests | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| extra-repositories: 'https://inla.r-inla-download.org/R/testing https://inlabru-org.r-universe.dev' | |
| - name: Install system dependencies on MacOS (X11, gdal) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install --cask xquartz | |
| brew install pkg-config | |
| brew install proj@9 | |
| brew install gdal | |
| - name: Install system dependencies on Linux (GL) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update -y && sudo apt-get install -y libglu1-mesa-dev | |
| - name: Has Suggests? | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sug <- as.list(read.dcf("DESCRIPTION")[1,])$Suggests | |
| sug <- gsub(" \\([^)]*\\)", "", sug) | |
| sug <- gsub("\n", "", sug) | |
| sug <- gsub(" ", "", sug) | |
| sug <- strsplit(sug, ",")[[1]] | |
| cat(paste0("Uninstalled Suggests: ", | |
| paste0(sug[!(sug %in% pkgs)], collapse = ", "), | |
| "\n")) | |
| cat(paste0("Installed Suggests: ", | |
| paste0(sug[sug %in% pkgs], collapse = ", "), | |
| "\n")) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"hard"' | |
| cache: false | |
| extra-packages: | | |
| rcmdcheck | |
| testthat | |
| remotes | |
| - name: Has Suggests? Remove INLA. | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| if ("INLA" %in% pkgs) { | |
| cat("Uninstalling INLA\n") | |
| remove.packages("INLA") | |
| } | |
| pkgs <- installed.packages()[, "Package"] | |
| sug <- as.list(read.dcf("DESCRIPTION")[1,])$Suggests | |
| sug <- gsub(" \\([^)]*\\)", "", sug) | |
| sug <- gsub("\n", "", sug) | |
| sug <- gsub(" ", "", sug) | |
| sug <- strsplit(sug, ",")[[1]] | |
| cat(paste0("Uninstalled Suggests: ", | |
| paste0(sug[!(sug %in% pkgs)], collapse = ", "), | |
| "\n")) | |
| cat(paste0("Installed Suggests: ", | |
| paste0(sug[sug %in% pkgs], collapse = ", "), | |
| "\n")) | |
| shell: Rscript {0} | |
| - name: Fix temporary out-of-sync binary packages | |
| run: | | |
| install.packages("MatrixModels", repos = "https://cloud.r-project.org", type = "source") | |
| shell: Rscript {0} | |
| - name: Session info without INLA | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| with: | |
| build_args: 'c("--no-manual", "--no-build-vignettes")' | |
| args: 'c("--no-manual", "--ignore-vignettes", "--as-cran")' | |
| - name: Has Suggests? Ensure INLA installed. | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| if (!("INLA" %in% pkgs)) { | |
| cat("Installing INLA\n") | |
| install.packages("INLA") | |
| } | |
| pkgs <- installed.packages()[, "Package"] | |
| sug <- as.list(read.dcf("DESCRIPTION")[1,])$Suggests | |
| sug <- gsub(" \\([^)]*\\)", "", sug) | |
| sug <- gsub("\n", "", sug) | |
| sug <- gsub(" ", "", sug) | |
| sug <- strsplit(sug, ",")[[1]] | |
| cat(paste0("Uninstalled Suggests: ", | |
| paste0(sug[!(sug %in% pkgs)], collapse = ", "), | |
| "\n")) | |
| cat(paste0("Installed Suggests: ", | |
| paste0(sug[sug %in% pkgs], collapse = ", "), | |
| "\n")) | |
| shell: Rscript {0} | |
| - name: Limit INLA version to 24.05.10 on old R version | |
| run: | | |
| if (getRversion() < "4.4.0") { | |
| remotes::install_version("INLA", version = "24.05.10", repos = "https://inla.r-inla-download.org/R/testing") | |
| } | |
| shell: Rscript {0} | |
| - name: Fix temporary out-of-sync binary packages | |
| run: | | |
| install.packages("MatrixModels", repos = "https://cloud.r-project.org", type = "source") | |
| shell: Rscript {0} | |
| - name: Session info with INLA | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| with: | |
| build_args: 'c("--no-manual", "--no-build-vignettes")' | |
| args: 'c("--no-manual", "--ignore-vignettes", "--as-cran")' |