-
Notifications
You must be signed in to change notification settings - Fork 1
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Prepare EML for GBIF upload #83
base: main
Are you sure you want to change the base?
Conversation
I also think it's best to remove the external link to IMIS (like |
And I would remove all emails of all creators/contacts, since there are still some odd emails there. ORCID is sufficient. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Looks good. The last paragraph in the description (that is added with our write_eml()
function) has escaped HTML characters. I think we should wrap that in <![CDATA[
.
<para><![CDATA[This is an acoustic telemetry dataset published by the Research Institute for Nature and Forest (INBO). It contains animal (fish) tracking data collected by what later became the Permanent Belgian Acoustic Receiver Network <a href="https://lifewatch.be/en/fish-acoustic-receiver-network"> (https://lifewatch.be/en/fish-acoustic-receiver-network)</a> for the project/study 2011_rivierprik, using VEMCO tags (V7, V8) and receivers (VR2, VR2W). In total 39 adult individuals of river lamprey (<i>Lampetra fluviatilis</i>) were captured, tagged and released in 2011 and 2012, to study the effect of weirs and shipping locks on their upstream spawning migration in the tidal and/or non-tidal part of the Scheldt river and its tributaries.]]></para> | ||
<para>The disruption of longitudinal and lateral connectivity of rivers has led to ecological catastrophes such as the extinction of several diadromous fish species. River lamprey is an important indicator species for the integrity of ecosystems and connectivity within and between catchment areas. In the highly fragmented Scheldt river basin first restoration actions are undertaken, such as the building of nature-like bypasses. The migration patterns in the river catchment and their behaviour at a tidal barrier, lock-weir complexes and fish bypasses (passage timing and delay) in the upper Scheldt river show that the disrupted water management of the river and in consequence of its barriers and bypasses are one keys to (un)successful spawning migration in the catchment, beside spawning habitat deterioration.</para> | ||
<para>The study was commissioned by the Vlaamse Waterweg NV.</para> | ||
<para>Data have been standardized to Darwin Core using the <a href="https://inbo.github.io/etn/">etn</a> package and are downsampled to the first detection per hour. The original data are managed in the European Tracking Network data platform (<a href="https://lifewatch.be/etn/">https://lifewatch.be/etn/</a>) and are available in Buysse et al. (2020, <a href="https://doi.org/10.14284/429">https://doi.org/10.14284/429</a>).</para> |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
It looks like this paragraph also needs to be wrapped in <![CDATA[
(cf. the first one). Can you update the script to do that?
This script prepares EML data extracted from IMIS for upload to a GBIF IPT.