Add inst and remove crayon and msg functions

.github/workflows/R-CMD-check.yaml

@@ -1,12 +1,10 @@
 on:
   push:
-    branches:
-      - main
+    branches: main
   pull_request:
-    branches:
-      - main
+    branches: main
 
-name: R-CMD-check
+name: R CMD Check
 
 jobs:
   R-CMD-check:
@@ -18,72 +16,39 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: windows-latest, r: 'release'}
+          - {os: macOS-latest, r: 'devel'}
           - {os: macOS-latest, r: 'release'}
-          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: windows-latest, r: 'devel'}
+          - {os: windows-latest, r: 'release'}
+          - {os: windows-latest, r: 'oldrel'}
+          - {os: ubuntu-22.04, r: 'devel'}
+          - {os: ubuntu-22.04, r: 'release'}
+          - {os: ubuntu-22.04, r: 'oldrel'}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      OWLBOT_TOKEN: ${{ secrets.OWLBOT_TOKEN }}
+      _R_CHECK_DONTTEST_EXAMPLES_: false
+      SPECIESPLUS_TOKEN: ${{ secrets.SPECIESPLUS_TOKEN }}
       CRAN: ${{ matrix.config.cran }}
 
     steps:
-      - uses: actions/checkout@v1
-
-      - uses: r-lib/actions/setup-r@master
-        with:
-          r-version: ${{ matrix.config.r }}
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-pandoc@master
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2)
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }}
-          restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-
+          use-public-rspm: true
 
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck, any::covr
+          needs: check
 
-      - name: Install dependencies
+      - uses: r-lib/actions/check-r-package@v2
+
+      - name: Test coverage
+        if: matrix.config.os == 'ubuntu-22.04' && matrix.config.r == 'release'
         run: |
-          library(remotes)
-          deps <- readRDS("depends.Rds")
-          deps[["installed"]] <- vapply(deps[["package"]], remotes:::local_sha, character(1))
-          update(deps)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Check
-        run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check")
+          covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")
         shell: Rscript {0}
-
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@master
-        with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
-
-      # - name: Test coverage
-      #   if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
-      #   run: |
-      #     remotes::install_cran("covr")
-      #     covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")
-      #   shell: Rscript {0}
-

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: skeleton
 Title: Template 
 Version: 0.0.0.9000
-Date: 2020-11-19
+Date: 2023-12-31
 Authors@R: 
     person(given = "Kevin",
            family = "Cazelles",
@@ -16,9 +16,8 @@ Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
 Imports: 
-    cli,
-    crayon
+    cli
 Suggests:
     testthat,
     knitr
-RoxygenNote: 7.1.1
+RoxygenNote: 7.2.3

NAMESPACE

@@ -1,9 +1,3 @@
 # Generated by roxygen2: do not edit by hand
 
 export(foo)
-importFrom(cli,style_bold)
-importFrom(cli,style_underline)
-importFrom(crayon,blue)
-importFrom(crayon,green)
-importFrom(crayon,red)
-importFrom(crayon,yellow)

R/foo.R

@@ -10,5 +10,6 @@
 #' foo(2, 3)
 
 foo <- function(x, y = x) {
+  cli::cli_alert_info("useful message")
   x + y + 1
 }

README.md

@@ -3,7 +3,7 @@
 
 This is our R package template repository. Note that this template was designed
 to be used with the [`devtools`](https://devtools.r-lib.org/) package (and
-[`usethis`](https://github.com/r-lib/usethis)). Therefore, the [R Packages](https://r-pkgs.org) represents a valuable reference to work with this package skeleton. 
+[`usethis`](https://github.com/r-lib/usethis)). Therefore, the book [R Packages](https://r-pkgs.org) represents a valuable reference to work with this package skeleton. 
 
 
 # Resources  
@@ -13,6 +13,7 @@ to be used with the [`devtools`](https://devtools.r-lib.org/) package (and
 - https://kevcaz.github.io/aboutRPackages/#1
 - https://ropensci.org/blog/2019/01/14/conduct/
 
+
 ## Code of Conduct
 
 Please note that this project is released with a [Contributor Code of Conduct](https://docs.ropensci.org/rcites/CONDUCT.html).

inst/raw-data/mock.csv

@@ -0,0 +1,3 @@
+"var1", "var2"
+1, 2
+3, 4